RetrogeneDB ID: | retro_gmax_29 | ||
Retrocopy location | Organism: | Soybean (Glycine max) | |
| Coordinates: | 15:37358151..37358564(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | GLYMA13G18005 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_gmax_29
ATACAAACAAAAACTTATTTCTATTCTTTACACGTTTCCTTGCAGAACATTATTGAGGTCCCTTTGTCTTACCATAGACA
GTGGAGGCCATATTACCCAACTTATGTTTTATTTTACCACAATGGAAGCACACATTTTGTTAGGGTACGAAAATATGGCA
ACCACTATTTTTTTGCTGATGGTCTCAAAGAGTTTAGGAGAACCCACAACATTAACGACGGTGTCATTATCCGGTTTTTT
GCTCCCGACAAAAATACATTTTTGAGGTTGATGTCATGGGGCCTATCCATGGGCAACCAACGGGAAGGTCAGTGGTTACA
ACAAGAAGGCACATCTTTACAACTGATGCCACACCAGAGATGGTGCAACACAACTTGCCTTTGGTAGGATTTTCCAACCC
ACTCAATTATGTT
ORF - retro_gmax_29 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 61.15 % |
| Parental protein coverage: | 88.46 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | MMARTRFTAAFRVQKNIIEVPLSYHSQWRPYYPTYVLFDYNGTKHFIRVHKCGTRCFFADGLKEFRRTHD |
| ....T.F........NIIEVPLSYH.QWRPYYPTYVLF..NG..HF.RV.K.G.....ADGLKEFRRTH. | |
| Retrocopy | IQTKTYFYSLHVSLQNIIEVPLSYHRQWRPYYPTYVLFYHNGSTHFVRVRKYGNHXXXADGLKEFRRTHN |
| Parental | INDSVIIRFFAASKDTSL-EVDIMGPILRQTCQRSVVTTRRHIFTADVTQDMIEHTNPLVLPATTLNFL |
| IND.VIIRFFA..K.T.L.EVD.MGPI..Q...RSVVTTRRHIFT.D.T..M..H..PLV.....LN.. | |
| Retrocopy | INDGVIIRFFAPDKNTFL<EVDVMGPIHGQPTGRSVVTTRRHIFTTDATPEMVQHNLPLVGFSNPLNYV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Glycine max was not studied using RNA-Seq expression data.
Glycine max was not studied using ChIP-Seq data.
Glycine max was not studied using EST data.
Glycine max was not studied using FANTOM5 data.
retro_gmax_29 was not experimentally validated.
Retrocopy orthology:
Glycine max does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Glycine max | GLYMA13G18005 | 1 retrocopy |
retro_gmax_29 ,
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