RetrogeneDB ID: | retro_ggor_79 | ||
Retrocopy location | Organism: | Gorilla (Gorilla gorilla) | |
| Coordinates: | 12:77462600..77463221(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSGGOG00000002908 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | RALB | ||
| Ensembl ID: | ENSGGOG00000001648 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_ggor_79
ATGGCCGCAAATAAGCCCAAGGGTCAGAATAATTTGGCCTTACACAAAGTCATCACGGTGGGCAGTACCGGTGTGGGCAA
GGCAGCTCTGACTCTACAGTTCATGTACGATGAGTTTGTGGAGGACTATGAGCTTATCAAAGAAGGCACCTATCGGAAGA
GAGTAGTACTGGTTGGCGAGGAAGTACAGATCGGTGTCTTAGAAACAGCTGGGCAGGAGGACTATGCTGCAATTAGGGAC
AACTATTTCCGAAGCAGAGAGGGGTTTCTCTGTGTCTTCTCTATTGCAGAAATGGAATCCTTTGCAGCTACAGCTGACTT
CAGGGAGCAGATTTTAAGAGTAAAAGAAGATGAGAATGTTCCATTTCTACTGGTTGGTAACAAATCAGATTTAGAAGATA
AAAGGCCGGTTTCTGTAAAAGAGGCAAAAAACAGAGCTGACCAGTGGACTGTTAACTATGTGGAAACATCTGCTAAAACA
CGAGCTAATGTTGACAAGGTATTTTTTTATTTAATGAGAGAAATTCGAGCAAAAAAGATGGAAGACAGCAAAGAAAAGAA
TGGAAAAAAGAAGAGGAAAAGTTCAGCCAAGAGAATCAGAGAAAGATGCTGCATTTTATAA
ORF - retro_ggor_79 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 72.95 % |
| Parental protein coverage: | 92.79 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MAANKSKGQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTA |
| MAANK.KGQ..LALHKVI.VGS.GVGK.ALTLQFMYDEFVEDYE..K...YRK.VVL.GEEVQI..L.TA | |
| Retrocopy | MAANKPKGQNNLALHKVITVGSTGVGKAALTLQFMYDEFVEDYELIKEGTYRKRVVLVGEEVQIGVLETA |
| Parental | GQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPV |
| GQEDYAAIRDNYFRS.EGFL.VFSI.E.ESF.ATA.FREQILRVK.E....P.L.VGNKSDLE..R.V.V | |
| Retrocopy | GQEDYAAIRDNYFRSREGFLCVFSIAEMESFAATADFREQILRVK-EDENVPFLLVGNKSDLEDKRPVSV |
| Parental | EEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSENKDKNGKKSSKNK-KSFKERCCLL |
| .EA...A..W.V.YVETSAKTRANVDKVFF.LMREIR.KKM...K.KNGKK..K...K...ERCC.L | |
| Retrocopy | KEAKNRADQWTVNYVETSAKTRANVDKVFFYLMREIRAKKMEDSKEKNGKKKRKSSAKRIRERCCIL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain_prefrontal_cortex | 1 .97 RPM | 56 .63 RPM |
| SRP007412_cerebellum | 1 .77 RPM | 16 .74 RPM |
| SRP007412_heart | 0 .66 RPM | 21 .17 RPM |
| SRP007412_kidney | 2 .54 RPM | 73 .44 RPM |
| SRP007412_liver | 1 .40 RPM | 26 .51 RPM |
| SRP007412_testis | 7 .67 RPM | 26 .73 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_79 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ggor_79 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Gorilla gorilla | ENSGGOG00000001648 | 1 retrocopy |
retro_ggor_79 ,
|
| Gorilla gorilla | ENSGGOG00000025649 | 1 retrocopy | |
| Sarcophilus harrisii | ENSSHAG00000012747 | 1 retrocopy |