RetrogeneDB ID: | retro_ggor_2105 | ||
Retrocopy location | Organism: | Gorilla (Gorilla gorilla) | |
| Coordinates: | 4:107062543..107062875(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSGGOG00000026872 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ENSG00000215831 | ||
| Ensembl ID: | ENSGGOG00000014398 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_ggor_2105
GTCACAGTTGATGTCCATTTCTGTGGAGTTAACTTTGCTCATATTTTGGTCTGCCGTGGTGAATATTAGGAAAGGCCCCA
TCTTCCCTTCATACCTGGAATGGAGTTTTCTGGGACAGGATTGGAGACAGACACAGATGTCAGCACAGTTAAAGAGGGAG
ATAGAGTTATTGGCATAAGAAACTTTAAATGTATGGCTGAAGAATGTGTCACTGATCAGAAGAACCTGTGGCAGATTCCA
GAAAAGTTCTCCCTACAAGAAGCTGCTGTCCTCCATTTATCTTATGGCACTGCTATTTTTGCTCTTGAGCATCGGCCCAT
ACCCAACCTGGA
ORF - retro_ggor_2105 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 79.46 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | VRVDVHFCGVNFGDILICRDQYQERPHLPFIPGMEFSGTVLETGTDVRTVKEGDRVIGTRNFNCMAEECV |
| V.VDVHFCGVNF..IL.CR..Y.ERPHLPFIPGMEFSGT.LET.TDV.TVKEGDRVIG.RNF.CMAEECV | |
| Retrocopy | VTVDVHFCGVNFAHILVCRGEY*ERPHLPFIPGMEFSGTGLETDTDVSTVKEGDRVIGIRNFKCMAEECV |
| Parental | TDQKDLWQIPEKVSL-EAAVLPITYGTVIFALED-WARTQPG |
| TDQK.LWQIPEK.SL.EAAVL...YGT.IFALE...A.TQPG | |
| Retrocopy | TDQKNLWQIPEKFSLQEAAVLHLSYGTAIFALEH<SAHTQPG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .86 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 0 .55 RPM |
| SRP007412_heart | 0 .00 RPM | 0 .31 RPM |
| SRP007412_kidney | 0 .00 RPM | 4 .66 RPM |
| SRP007412_liver | 0 .00 RPM | 3 .77 RPM |
| SRP007412_testis | 0 .10 RPM | 0 .62 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2105 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ggor_2105 has 1 orthologous retrocopies within eutheria group .| Species | RetrogeneDB ID |
|---|---|
| Pongo abelii | retro_pabe_2539 |
Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Gorilla gorilla | ENSGGOG00000014398 | 1 retrocopy |
retro_ggor_2105 ,
|
| Pongo abelii | ENSPPYG00000000475 | 1 retrocopy |