RetrogeneDB ID: | retro_ggor_126 | ||
Retrocopy location | Organism: | Gorilla (Gorilla gorilla) | |
| Coordinates: | 11:63426457..63426922(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSGGOG00000023393 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ENSG00000214248 | ||
| Ensembl ID: | ENSGGOG00000026901 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_ggor_126
CACCATGCCCGGCTAATTGTTTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTGGAACTCCT
GACCTCAGGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTATGAGCCACTGCGCCCAGCCCACAATAT
CTTATTTTCATATTTTTTTGTGTGTTTTGTTTTATTTTTCGAGATGGAGTCTCTCTGTTGCCCAAGCTGGAGTGCAATGG
CGTGATCTTTGCTCACTTCCTGGGTTCAAGCGATTCTCCTGCCTTAGCCTCCCAAGTAACTGGGATTGCAGGCACCCGCC
ATCATGCCCTGTTAAATTTTGTACTTTTGTAGAGATGGGGTTTCACCATGTTGGTCAGGCTGGTCTTGAACTGCTGACCT
CAGGTGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCTGG
ORF - retro_ggor_126 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.83 % |
| Parental protein coverage: | 72.44 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | HHARLS-FVFLVETRFHHVGQAGLELLTSGDLPASASQSSGITAMSHRAWP-LNFYFLKLAFFFFLETES |
| HHARL..FVFLVET.F.HVGQAGLELLTSGD.PASASQS.GIT.MSH.A.P........L...F.....S | |
| Retrocopy | HHARLIVFVFLVETGFLHVGQAGLELLTSGDPPASASQSAGITGMSHCAQPTISYFHIFLCVLFYFSRWS |
| Parental | RSVTQARVQWHDLGSLQPPPPGFK |
| .SV.QA.VQW.DL.SL....PGFK | |
| Retrocopy | LSVAQAGVQWRDLCSL----PGFK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .82 RPM | 0 .00 RPM |
| SRP007412_cerebellum | 0 .75 RPM | 0 .00 RPM |
| SRP007412_heart | 0 .19 RPM | 0 .00 RPM |
| SRP007412_kidney | 1 .10 RPM | 0 .00 RPM |
| SRP007412_liver | 0 .47 RPM | 0 .00 RPM |
| SRP007412_testis | 0 .31 RPM | 0 .00 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_126 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ggor_126 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Gorilla gorilla | ENSGGOG00000026901 | 1 retrocopy |
retro_ggor_126 ,
|