RetrogeneDB ID: | retro_ggor_1072 | ||
Retrocopy location | Organism: | Gorilla (Gorilla gorilla) | |
| Coordinates: | 14:83535234..83535714(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSGGOG00000003406 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | DIO1 | ||
| Ensembl ID: | ENSGGOG00000015406 | ||
| Aliases: | None | ||
| Description: | deiodinase, iodothyronine, type I [Source:HGNC Symbol;Acc:2883] |
Retrocopy-Parental alignment summary:
>retro_ggor_1072
GGCGGTCCGGCGCCCAACTCCGAGGTGGTTCTGCCCGACGGCTTCCAGAGCCAGCACATCCTCGACTACGCGCAAGGGAA
CCGCCCGCTGGTTCTCAATTTCGGCAGCTGCACCTGACCACCGTTCATGGCGCGCATGAGCGCCTTCCAGCGCCTGGTCA
CCAAGTACCAGAGTGACGTCGACTTCCTCATCATCTACATCGAGGAAGCGCACCCCTCCGACGGCTGGGTCACCACGGAC
TCTCCCTACGTCATCCCACAGCACCGGAGCCTGGAGGACCGGGTCAGCGCAGCGAGGGTACTGCAGCAAGGTGCACCCGG
CTGCGCTCTGGTCCTCGACACCATGGCCAACTCCAGCAGCTCGGCCTATGGTGCCTACTTCGAGCGTCTCTATGTCATCC
AGAGTGGCACTATTATGTACCAGGGCGGCCGTGGCCCCGACGGCTACCAGGTCTCTGAGCTGCGCACTTGGTTGGAACGC
ORF - retro_ggor_1072 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 51.25 % |
| Parental protein coverage: | 63.45 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | GGLAPNCPVVRLSG-QRCNIWEFMQGNRPLVLNFGSCTUPSFMFKFDQFKRLIEDFSSIADFLVIYIEEA |
| GG.APN..VV...G.Q...I....QGNRPLVLNFGSCT.P.FM.....F.RL.....S..DFL.IYIEEA | |
| Retrocopy | GGPAPNSEVVLPDGFQSQHILDYAQGNRPLVLNFGSCT*PPFMARMSAFQRLVTKYQSDVDFLIIYIEEA |
| Parental | HASDGWAFKNN-MDIRNHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYVIQEGRILY |
| H.SDGW........I..H..L.DR..AA..L....P.C..V.DTM.N.SS..Y.A..ERLYVIQ.G.I.Y | |
| Retrocopy | HPSDGWVTTDSPYVIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMY |
| Parental | KGKSGPWNYNPEEVRAVLEK |
| .G..GP..Y...E.R..LE. | |
| Retrocopy | QGGRGPDGYQVSELRTWLER |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .05 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 0 .04 RPM |
| SRP007412_heart | 0 .00 RPM | 0 .06 RPM |
| SRP007412_kidney | 0 .04 RPM | 54 .14 RPM |
| SRP007412_liver | 1 .00 RPM | 14 .69 RPM |
| SRP007412_testis | 0 .00 RPM | 0 .10 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1072 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ggor_1072 has 1 orthologous retrocopies within eutheria group .| Species | RetrogeneDB ID |
|---|---|
| Homo sapiens | retro_hsap_65 |
Parental genes homology:
Parental genes homology involve 4 parental genes, and 4 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Homo sapiens | ENSG00000211452 | 1 retrocopy | |
| Gorilla gorilla | ENSGGOG00000015406 | 1 retrocopy |
retro_ggor_1072 ,
|
| Microcebus murinus | ENSMICG00000014290 | 1 retrocopy | |
| Tursiops truncatus | ENSTTRG00000009105 | 1 retrocopy |