RetrogeneDB ID: | retro_fcat_959 | ||
Retrocopy location | Organism: | Cat (Felis catus) | |
| Coordinates: | B4:47578285..47579544(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ICK | ||
| Ensembl ID: | ENSFCAG00000005238 | ||
| Aliases: | None | ||
| Description: | intestinal cell (MAK-like) kinase [Source:HGNC Symbol;Acc:21219] |
Retrocopy-Parental alignment summary:
>retro_fcat_959
GAGGAATGCATGAACCTTTAAGAGGTTAAGTCTTCAAAAAAGCTCAACCATGCCAATGTAGTTAAATGGAAAGAAGTTAT
CAGGGAAAATGATCATCTTTATTTTATCTTCGAGGACATGAAGGAGTAGCTTTACCAGCTCATTAAAGAAAGAAATAAGT
GGTTTCCTGAATCAGCTATAAGGAATATCATGTATCAGATATTACAAGGACTTGTGTTTCTTCACAAACATGGCTTCTTC
CAGCAGGACTTAAAGCCTGAGAACTTTCTCTGCACCAGCCCAGAACTTGTGAAAATACAGACTTCAGGTTGGCAGGAGAA
ATCCGATCAAGACCTCCATACACAGACTATGTATCTACCAGAAGGTACAGGGCTCCAGAAGTGCTCCTGAGGTCTACCAG
TTGTGCTCCTCCATTGACATCTGGGCTGTGGGCTGCCTCATGGCAGAAGTGTGCACCCTCAGGCCACTCTTCGCTGGGGC
CAGTGAAATCAACACAATTTTCAAAACTTGCCAACTGTTGGGGACCCGGAAAAAGACCAACGGGCCCGAAGGCTACCAAC
TTCCAAGTGCGATGGACTTCCACTGGCCCCAGAAGGTACCCAATAACTTAAAGACCTTGATTCCAAATGCTAGCGGCAAA
GCCGTTCAACTCCTGAGAGACAAGCTGCAGGGGGATCCCAAGAAACAGCCAACAGCTAAGTCAGGCCCTTCAACAGCCTT
ACTTGCGGACCAGGCATTCACTGGGCTACATCGCATGGAGCCTTCGGGATTCGGGAAAACCACAGAAGGATGTCCTGGAA
AAGGTAGGCCCACCTTCTCACATGAAGCCTGTCCACGCTACCCAGATCCCACCCAAGCCAAGTGCACAGATTTCTTCAAG
GCAGCATCAAGCCCTCCAGCCTTCTTGGCATTTCATGTACCCCCCACAAAGCAGAGGCTCCCAGGCCGGATCACTCGAAC
CACCTTCTGGTGGACAAGCCAAGCCCGTTGCTCTTCCTGTCCCTCCATACCAAGAATCCCCAGTCGAAAATACGAGCTGG
CCTGGAACACAAAAATGGTGAGATCAAGCCAAAGAGTAGGAGAAGGTGGGTCTTGCCTCCTGGTCAACAAAGGAATCTGA
TGACTGGGTTGACTCGGTTGGATGACTTAGATTACAGTCTATCGCTCACCAGGATTGCCCTGAAAAACAGGAAGAGACAG
AGTGAAGAGAGACCCTCTGCAGAACTGAGAGTGGTTTGGACCTGAAGCCCTCTGCGCCC
ORF - retro_fcat_959 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 74.12 % |
| Parental protein coverage: | 66.14 % |
| Number of stop codons detected: | 4 |
| Number of frameshifts detected: | 5 |
Retrocopy - Parental Gene Alignment:
| Parental | EECMNLREVKSLKKLNHANVVKLKEVIRENDHLYFIFEYMKENLYQLIKERNKLFPESAIRNIMYQILQG |
| EECMNL.EVKS.KKLNHANVVK.KEVIRENDHLYFIFE.MKE.LYQLIKERNK.FPESAIRNIMYQILQG | |
| Retrocopy | EECMNL*EVKSSKKLNHANVVKWKEVIRENDHLYFIFEDMKE*LYQLIKERNKWFPESAIRNIMYQILQG |
| Parental | LAFIHKHGFFHRDLKPENLLCMGPELVKI-ADFGLAREIRSRPPYTDYVSTRWYRAPEVLLRSTNYSSP- |
| L.F.HKHGFF..DLKPEN.LC..PELVKI..DF.LA.EIRSRPPYTDYVSTR.YRAPEVLLRST....P. | |
| Retrocopy | LVFLHKHGFFQQDLKPENFLCTSPELVKI<TDFRLAGEIRSRPPYTDYVSTRRYRAPEVLLRSTSCAPP< |
| Parental | IDIWAVGCIMAEVYTLRPLFPGASEIDTIFKICQLLGTPKKTDWPEGYQLSSAMNFRWPQCVPNNLKTLI |
| IDIWAVGC.MAEV.TLRPLF.GASEI.TIFK.CQLLGT.KKT..PEGYQL.SAM.F.WPQ.VPNNLKTLI | |
| Retrocopy | IDIWAVGCLMAEVCTLRPLFAGASEINTIFKTCQLLGTRKKTNGPEGYQLPSAMDFHWPQKVPNNLKTLI |
| Parental | PNASSEAIQLLRDMLQWDPKKRPTA-SQALRYPYFQIGHPLGSTTQSLQDSGKPQKDVLEKAGPPPHIKP |
| PNAS..A.QLLRD.LQ.DPKK.PTA.SQAL..PY....H.LG....SL.DSGKPQKDVLEK.GPP.H.KP | |
| Retrocopy | PNASGKAVQLLRDKLQGDPKKQPTA>SQALQQPYLRTRHSLGYIAWSLRDSGKPQKDVLEKVGPPSHMKP |
| Parental | IPPAQPPTKPHTRISSRQHQASQPPQHLMY-PYKTEASRTDHLNHLPEDKPSPLLFPSLHTKNPQSKMLA |
| ....Q.P.KP...ISSRQHQA.QP..H.MY.P.K.EA.R.DH.NHL..DKPSPLLF.SLHTKNPQSK..A | |
| Retrocopy | VHATQIPPKPSAQISSRQHQALQPSWHFMY>PHKAEAPRPDHSNHLLVDKPSPLLFLSLHTKNPQSKIRA |
| Parental | GLEHKNGEIKPKSRRRW-GLVSRSTKDSDDWADLDDLDFSPSLSRMDLKNKKRQSE--ETLCRFESVLDL |
| GLEHKNGEIKPKSRRRW.GL.S.STK.SDDW.D........S....D...K....E..ETLCR.ES.LDL | |
| Retrocopy | GLEHKNGEIKPKSRRRW<GLASWSTKESDDWVDSVG*LRLQSIAHQDCPEKQEETE*RETLCRTESGLDL |
| Parental | KPSEP |
| KPS.P | |
| Retrocopy | KPSAP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 26 .40 RPM |
| SRP017611_kidney | 0 .00 RPM | 27 .21 RPM |
| SRP017611_liver | 0 .00 RPM | 30 .93 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_959 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_959 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Felis catus | ENSFCAG00000005238 | 1 retrocopy |
retro_fcat_959 ,
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