RetrogeneDB ID: | retro_fcat_867 | ||
Retrocopy location | Organism: | Cat (Felis catus) | |
| Coordinates: | B3:126749147..126749595(+) | ||
| Located in intron of: | ENSFCAG00000011083 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | RNF103 | ||
| Ensembl ID: | ENSFCAG00000013620 | ||
| Aliases: | RNF103, CHMP3 | ||
| Description: | ring finger protein 103 [Source:HGNC Symbol;Acc:12859] |
Retrocopy-Parental alignment summary:
>retro_fcat_867
GCTGTGAGCAAGCTCTATGCTTCCAATGCTCACGTGAACTCCGTGCTCATAGGGATGAAGAACCAGCTGGTGGTTTTGCG
AGTGGCTGGTTCCCTGCAAAAGAGCAAAGAAGTGATGAAGGCCATGCAGAGCCTTGTGAAGATCCCAGAAATCCAGGCCA
CCATGAGGGAGCTATCCAAAGAGATGATGAAGGCTGGCATCATAGAAGAAATGTTAGAAGATACTTTTTGAAAGCATGGA
TGATCAGGAAGAAATGGAAGAAGCAGCAGAAATGGAAGTTGACAAAATTCTGTTTGAAATCACAACAGGTGCCTTGGGCA
AAGCACCTAGTAAAGTGACCGATGCCTTCCCGGAGCCCAGACCTTCAGGAGCAATGGCTGCATCAGAAGATGAGGAGGAA
GAAGAGGCCCTGGAGGCCATGCAGTCCCATCTTGCCACACTCTGCAGC
ORF - retro_fcat_867 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 92.0 % |
| Parental protein coverage: | 59.6 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | AVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEE |
| AVSKLYAS.AH.NSVL.GMKNQL.VLRVAGSLQKS.EVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEE | |
| Retrocopy | AVSKLYASNAHVNSVLIGMKNQLVVLRVAGSLQKSKEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEE |
| Parental | MLEDTF-ESMDDQEEMEEAAEMEIDKILFEITAGALGKAPSKVTDALPEPEPSGAMAASEDEEEEEALEA |
| MLEDTF.ESMDDQEEMEEAAEME.DKILFEIT.GALGKAPSKVTDA.PEP.PSGAMAASEDEEEEEALEA | |
| Retrocopy | MLEDTF>ESMDDQEEMEEAAEMEVDKILFEITTGALGKAPSKVTDAFPEPRPSGAMAASEDEEEEEALEA |
| Parental | MQSRLATLRS |
| MQS.LATL.S | |
| Retrocopy | MQSHLATLCS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 68 .29 RPM |
| SRP017611_kidney | 0 .10 RPM | 84 .40 RPM |
| SRP017611_liver | 0 .00 RPM | 56 .71 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_867 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_867 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Felis catus | ENSFCAG00000013620 | 1 retrocopy |
retro_fcat_867 ,
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