RetrogeneDB ID: | retro_fcat_741 | ||
Retrocopy location | Organism: | Cat (Felis catus) | |
| Coordinates: | B2:146422717..146423097(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | FGGY | ||
| Ensembl ID: | ENSFCAG00000030121 | ||
| Aliases: | None | ||
| Description: | FGGY carbohydrate kinase domain containing [Source:HGNC Symbol;Acc:25610] |
Retrocopy-Parental alignment summary:
>retro_fcat_741
CTGTCTCAGGACCTCAATGATCTTGCCATTCTCTATCTGGCCACAGTTCAAGCCATTGCTTTTGGGACCCACCTCATTAT
AGAGACCTTGGGGGTGGTGGGGCACTGTATCAGCGCTGTTTTCCTGTGTGGAGACCTGAGCAGGAATCCCCTTTTGTGCA
GGTGCACGCGGACATTACAGGCAGGCCTGTGGTCCTGTTGCAAGAGGTGGAGTCTGTTCTTGTGGGCGCTGTTATTCTGG
GTGCCGGTGCCTCTGGGGATTTCACTTCTGTACCGGAGGCAATGGCTAGAATGAGCAAAGTTGGGAAAGTCGTGTTTCCT
AGACTGGAGGATAAAAGATACTATGACAAGAAATATGAAGTATTCCTGAAGCTGGTTGAG
ORF - retro_fcat_741 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 65.62 % |
| Parental protein coverage: | 50.2 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | LSQDLDDLAILYLATVQAIAFGTRLIIEALEAAGHSLSTLFLCGGLSKNPL-FVQMHADITGMPVVLSQE |
| LSQDL.DLAILYLATVQAIAFGT.LIIE.L...GH..S..FLCG.LS.NPL.FVQ.HADITG.PVVL.QE | |
| Retrocopy | LSQDLNDLAILYLATVQAIAFGTHLIIETLGVVGHCISAVFLCGDLSRNPL<FVQVHADITGRPVVLLQE |
| Parental | VESVLVGAAILGACASGDFASVQVYLASVS-VGHSVFLHLLSTRAAEVKQQISKKVTE |
| VESVLVGA.ILGA.ASGDF.SV....A..S.VG..VF..L...R....K.....K..E | |
| Retrocopy | VESVLVGAVILGAGASGDFTSVPEAMARMSKVGKVVFPRLEDKRYYDKKYEVFLKLVE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 2 .98 RPM |
| SRP017611_kidney | 0 .00 RPM | 13 .09 RPM |
| SRP017611_liver | 0 .00 RPM | 17 .99 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_741 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_741 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Felis catus | ENSFCAG00000030121 | 1 retrocopy |
retro_fcat_741 ,
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