RetrogeneDB ID: retro_fcat_71

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: C2:125292067..125293423(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSFCAG00000030582
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSFCAG00000018518
• Aliases: None
• Description: None

Sequence

>retro_fcat_71
ATGGATTCTACTTTTGTGCACTGCGCCCCCAGTCTGCTTATCTGTTCCATCTGCAAGGACTATTTCACAGACCCTGTCAC
CATTAACTGTGGACACAGCTTTTGTACTCCGTGTCTCTGCCTCCTGTGGGAAGATGCCCAGCATCCTACCTGTTGCCCTG
TATGCAGGGCTGTATCTCCACGCATGGACTTCAAAAGCATTATTTCTGCTGAGGGACAAGCTCGTGCTAAAAAAGAATCA
GTTGCCAAGCAGTTACCAAGGTCTGCCAGGCAGGTGTGTTGGATACACCAAGCACTAAAGAATATCTTCTGTCCAACTGA
CAAGAGCCTGCTGTGTTTGCAATGCTCTCATGTGCCAGGGCATACCACTCACATACACTGTCCAGTTTCACAGGTCGCTG
AGCACTGCAGGGAGAAACTTCTGATGCAAATGAAATCTATTTGGAAAAACAGGCAGAGAAATCAGAGAAATATAAACAAA
GAGTACAACTTACTTAGAGTATGGCAGGGTTTTGTAAATCTAAGGATGGTGATGATCAAGGCTGACTATCCTAAGGTGTA
CCAATACCTCCACAAAGAAAAGCAAAAACATTTAGAGAGCCTGGCAATTGAAGGCAAGATAATTTTTCATCGACTCTGGA
GAAATGTAGCTAGAATGCTTCAAATGGGGAAACTCCTGAAAAGAATCTATGAGGAGCTGAAGGAAATGTGCCTCAAAGCA
GATGTGCACCTGCTCCAGGATTTGGAAGACATCATGAAAAGGAGTCAGTTAGTGCAGGCGCACTTGCCCCAGCCTGTGGA
CCCACAGCCCAGTGAGTGGACAATCACCGGGATGTCTGAAAGGCTTAACAACTTCCGAGTGTATATTACATTTGGTGATA
ACATAAGGAATTACCGTGTGCCTCTGTTTAAAGACCTGAGACGTTTGCAGTGCTGTCCCGACCATCAAGACCTGCCCCGC
AGTCCAGCGAGTTCACAGTATAAGCCTTCCTGGGCAGCTCAGGCTGCCTTCACCTCTGGCAAATATTACTGGGAGGTGGA
TGTGGGAAACTCTCAGAACTGGATTAAAGGACTTTGCAGGGAATCCTGGACAAAACACCATGACTTGCTCCTCAACTCTG
AGGGTATCTTTCTACTTCTGTGTGTCAACATGGATAACCATTGCCGTCTCTTCTCTGCCTCCCTGCCACTGTGCCACTAC
ATTCCAAGACCCCAGGGCTTGGTAGGGGTGTTTTTAGATTATGAATTTGATATAGTAAGTTTTGTTAATGTTGCCAAAAG
TTCCCTCATTTATAATTTCCTTTCCTGTTCCTTCTCCTTCCCTCTCAGACCTTTCATTTGTTATGTAACCAAATGA

Alignment

ORF - retro_fcat_71 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.01 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MDSTFVRYAPSLLICSICKDYFTDPVTINCGHSFCTPCLCLLWEDAQHPTRCPVCRAVSPRMDFKSIISA
          MDSTFV..APSLLICSICKDYFTDPVTINCGHSFCTPCLCLLWEDAQHPT.CPVCRAVSPRMDFKSIISA
Retrocopy MDSTFVHCAPSLLICSICKDYFTDPVTINCGHSFCTPCLCLLWEDAQHPTCCPVCRAVSPRMDFKSIISA

Parental  EGQARAKKESVAKKLPRSARQVCWIHQALKNIFCPTDKSLLCLQCSHSPGHTTHIHCPVSQVAEHCREKL
          EGQARAKKESVAK.LPRSARQVCWIHQALKNIFCPTDKSLLCLQCSH.PGHTTHIHCPVSQVAEHCREKL
Retrocopy EGQARAKKESVAKQLPRSARQVCWIHQALKNIFCPTDKSLLCLQCSHVPGHTTHIHCPVSQVAEHCREKL

Parental  LMQMKSIWKNRQRNQRNINKEYNLLRVWQGFVNLRMVMIKAEYPKVYQYLHKEKQKHLESLAIEGKIIFH
          LMQMKSIWKNRQRNQRNINKEYNLLRVWQGFVNLRMVMIKA.YPKVYQYLHKEKQKHLESLAIEGKIIFH
Retrocopy LMQMKSIWKNRQRNQRNINKEYNLLRVWQGFVNLRMVMIKADYPKVYQYLHKEKQKHLESLAIEGKIIFH

Parental  RLRRNVARMLQMGKLLKRIYEELKEMCLKADVHLLQDLGDIMKRSQLVQAHLPQPVDPQLSEWTITGMSE
          RL.RNVARMLQMGKLLKRIYEELKEMCLKADVHLLQDL.DIMKRSQLVQAHLPQPVDPQ.SEWTITGMSE
Retrocopy RLWRNVARMLQMGKLLKRIYEELKEMCLKADVHLLQDLEDIMKRSQLVQAHLPQPVDPQPSEWTITGMSE

Parental  RLNNFRVYITFDDKIRNYRVPLFEDLRRLQCCPDHQDLPHSPASSQYKPSWAAQ-TFTCGKYYWEVDVGN
          RLNNFRVYITF.D.IRNYRVPLF.DLRRLQCCPDHQDLP.SPASSQYKPSWAAQ..FT.GKYYWEVDVGN
Retrocopy RLNNFRVYITFGDNIRNYRVPLFKDLRRLQCCPDHQDLPRSPASSQYKPSWAAQAAFTSGKYYWEVDVGN

Parental  SQNWIIGLCRESWTKRHDMLLNSEGIFLLLCVNVDDHCRLFSASPPLRHYIPRPQGLVGVFLDYEFGIVS
          SQNWI.GLCRESWTK.HD.LLNSEGIFLLLCVN.D.HCRLFSAS.PL.HYIPRPQGLVGVFLDYEF.IVS
Retrocopy SQNWIKGLCRESWTKHHDLLLNSEGIFLLLCVNMDNHCRLFSASLPLCHYIPRPQGLVGVFLDYEFDIVS

Parental  FVNVAKSSLICNFLSCSFSFPLRPFICYGPK
          FVNVAKSSLI.NFLSCSFSFPLRPFICY..K
Retrocopy FVNVAKSSLIYNFLSCSFSFPLRPFICYVTK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	0.00 RPM
SRP017611_kidney	0.00 RPM	0.00 RPM
SRP017611_liver	0.00 RPM	0.00 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_71 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_71 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000018518	1 retrocopy	retro_fcat_71 ,
Monodelphis domestica	ENSMODG00000001670	1 retrocopy	retro_mdom_60,