RetrogeneDB ID: | retro_fcat_7 | ||
Retrocopy location | Organism: | Cat (Felis catus) | |
| Coordinates: | A1:42242257..42245356(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSFCAG00000013764 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSFCAG00000023574 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_fcat_7
ATGGACCTGAGGGATATTTACCTGTTGGCTGCTCTGATTGCCTGTTTAAGGCTGGATTCCGCAATAGCTCAAGAACTTAT
TTACACTATTAGAGAGGAATTGCCTGAAAATGTGCCCATAGGAAACATACCAAAGGATCTGAACATTTCTCACATCAATG
CTGCCACAGGGACCAGTGCCAGCCTTGTCTACAGACTGGTTTCTAAAGCTGGGGATGCCCCTTTGGTGAAAGTATCCAGT
AGCACTGGGGAAATTTTCACAACCTCCAATAGAATAGACAGAGAAAAACTCTGTGCTGGAGCCTCTTATGCTGAGGAGAA
TGAGTGTTTCTTTGAACTTGAGGTAGTGATCCTCCCCAATGATTTTTTCAGGCTGATCAAAATAAAAATAATTGTCAAGG
ATACCAATGATAATGCCCCCATGTTTCCATCCCCTGTCATCAATATTTCCATTCCAGAAAACACTTTGATCAACAGCCGC
TTTCCAATTCCATCAGCAACAGATCCTGACACAGGCTTCAATGGTGTACAGCATTATGAATTGTTAAATGGGCAGAGTGT
TTTTGGACTGGATATCGTGGAAACTCCGGAGGGAGAGAAGTGGCCGCAATTGATTGTTCAGCAAAACTTGGACAGAGAAC
AGAAAGATACCTATGTGATGAAAATCAAAGTAGAGGATGGAGGCACTCCACAGAAATCCAGCACGGCCATACTGCAGGTC
ACAGTAAGTGATGTAAATGACAACAGGCCAGTGTTTAAAGAGGGTCAAGTGGAGGTGCATATTCCAGAGAATGCTCCTGT
GGGCACCTCTGTAATTCAGCTCCATGCCACTGATGCAGATATAGGCAGTAATGCTGAAATCCGGTACATTTTTGGTGCCC
AGGTCGCCCCTGCAACCAAAAGGCTCTTTGCTTTAAATAATACTACTGGGCTGATTACAGTTCAGAGGTCCCTAGATCGA
GAGGAGACAGCCATTCACAAAGTGACAGTGCTGGCTAGTGATGGCAGCTCCACTCCTGCTCGAGCAACGGTTACCATCAA
TGTCACTGATGTAAATGATAACCCTCCTAACATAGACCTCAGGTACATTATAAGTCCCATCAATGGCACAGTGTATTTAT
CTGAGAAAGATCCTGTCAATACAAAGATTGCCCTAATTACAGTTTCAGATAAGGACACAGATGTGAATGGCAAAGTGATC
TGTTTTATTGAAAGAGAGGTCCCATTTCATTTGAAGGCAGTATACGATAACCAATATTTGTTAGAGACCTCCTCTTTGTT
GGACTATGAGGGCACCAAAGAATTCAGCTTTAAAATTGTTGCCTCTGATTCTGGGAAACCCAGTTTAAATCAGACTGCCC
TGGTAAGGGTTAAGCTTGAGGACGAAAATGACAACCCACCAATTTTCAACCAGCCTGTAATTGAGCTGTCAGTTTCTGAA
AACAACCGACGTGGGTTATACTTAACAACTATTAGTGCCACAGATGAAGACAGTGGGAAAAATGCGGACATTGTTTATCA
GCTTGGACCGAATGCCTCCTTCTTTGATTTGGACCGAAAGACAGGAGTTTTGACAGCCTCCAGAGTCTTTGACAGAGAAG
AACAGGAGCGGTTCATTTTTACAGTAACTGCCAGGGACAATGGAACCCCTCCCCTCCAAAGCCAAGCGGCCGTGATAGTT
ACTGTTCTGGATGAGAATGACAATAGCCCCAAGTTTACTCATAATCATTTTCAATTTTTTGTGTCTGAGAATCTGCCAAA
GTATAGTACTGTGGGGGTAATCACAGTGACAGATGCAGATGCTGGAGAGAATAAAGCTGTGACTCTCTCCATTCTAAATG
ACAATGATAATTTTGTGCTGGATCCCTATTCTGGAGTCATAAAGTCAAATGTCTCATTTGATAGAGAGCAGCAGAGTTCC
TACACTTTTGATGTCAAAGCCACTGATGGAGGACAACCACCTCGTTCCTCCACTGCAAAAGTAACTATCAATGTCATGGA
TGTCAATGACAATAGCCCAGTTGTCATTTCTCCACCTTCCAACACTTCTTTTAAGTTGGTACCCCTCTCAGCCATTCCTG
GCTCTGTGGTAGCAGAAGTTTTTGCGGTGGATATCGACACTGGGATGAACGCCGAACTGAAGTATACAATTGTGAGTGGG
AACAACAAAGGCTTGTTTCGGATCGATCCAGTAACAGGTAACATCACTCTGGAAGAGAAGCCAGCACCTACTGATGTGGG
CTTGCACCGTTTGGTGGTCAATATAAGTGACCTGGGATACCCTAAGTCTTTGCACACACTCGTGCTTGTTTTTCTTTACG
TTAATGACACCGCTGGGAATGCCTCCTATATCTATGACTTGATTCGCAGGACTATGGAGACCCCACTGGATAGGAACATA
GGGGACAGTAGCCAACCCTATCAAAATGAGGACTATCTCACCATCATGATTGCCATCGTCGCAGGGGCCATGGTGGTCAT
AGTGGTGATCTTCGTCACCGTCCTGGTGCGATGTCGCCATGCATCGAGGTTCAAAGCAGCTCAGAGGAGCAAGCAAGGTG
CTGAGTGGATGTCCCCAAACCAGGAGAACAAACAAAACAAGAAAAAGAAAAGGAAGAAAAGAAAGTCTCCCAAGAGCTCT
CTTTTGAACTTTGTTACAATTGAAGAGTCCAAACCTGACGATGCAGTTCACGAACCTATCAATGGGACAATAAGCCTGCC
CGCTGAGCTGGAGGAGCAAAGTATAGGAAGATTTGACTGGGGCCCAGCCCCTCCAACAACCTTCAAGCCTAACAGCCCTG
ACCTGGCCAAGCACTACAAATCTGCTTCTCCACAGCCTGCTTTTCATCTTAAACCAGACACTCCGGTTTCCGTGAAAAAG
CATCATGTGATTCAGGAACTCCCTTTGGACAACACCTTTGTCGGGGGTTGTGACACCCTCTCCAAACGCTCTTCCACTAG
TTCAGATCACTTCAGTGCCTCAGAGTGCAGTTCCCAAGGAGGCTTCAAGACAAAGGGCCCCTTACACACCAGACAGGTAA
ACGAGCACTTTTACTGGTCTATAAGTACTGCATACAAGTGCCCAGTCAACCAGTATTAA
ORF - retro_fcat_7 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 57.36 % |
| Parental protein coverage: | 99.71 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LSGTYIFAVLLACVVFQSG-AQEKNYTVQEEMPENVLIGDLLKELNLSLIPEKSLTSP-MQFKLVYKTGD |
| L...Y..A.L.AC....S..AQE..YT..EE.PENV.IG...K.LN.S.I.....TS......LV.K.GD | |
| Retrocopy | LRDIYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSASLVYRLVSKAGD |
| Parental | VPLIRIEEGTGEIFTAGARIDREKLCV--DILVETRCFYEVEVAVLPDEIFRLVKIRFLLEDINDNAPLF |
| .PL......TGEIFT...RIDREKLC.......E..CF.E.EV..LP...FRL.KI.....D.NDNAP.F | |
| Retrocopy | APLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPNDFFRLIKIKIIVKDTNDNAPMF |
| Parental | PATVINISIPENSAINSRYALPAAIDPD-GINGVQNYQLIKGQSMFGLDVIETPEGDKTPQIIVQKELDR |
| P..VINISIPEN..INSR...P.A.DPD.G.NGVQ.Y.L..GQS.FGLD..ETPEG.K.PQ.IVQ..LDR | |
| Retrocopy | PSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYELLNGQSVFGLDIVETPEGEKWPQLIVQQNLDR |
| Parental | EEKDTYVMKVKVEDGGFPRRSS-AILQINVADTNDNHPVFKENEIEVSIPENAPVGTSVTQLHATDADIG |
| E.KDTYVMK.KVEDGG.P..SS.AILQ..V.D.NDN.PVFKE...EV.IPENAPVGTSV.QLHATDADIG | |
| Retrocopy | EQKDTYVMKIKVEDGGTPQKSSTAILQVTVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIG |
| Parental | ENAKIHFYFSNLVSNITKKLFHLNNNTGLITIKEPLDREESPNHKLQVLASDGGLMPARAMVLVNVTDIN |
| .NA.I...F...V...TK.LF.LNN.TGLIT....LDREE...HK..VLASDG...PARA.V..NVTD.N | |
| Retrocopy | SNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVN |
| Parental | DNVPSIDIRYIINPINGTVILSENAPLHTKIALITVTDKDADHNGRVTCFTDHEVPFRLRPVFSNQFLLE |
| DN.P.ID.RYII.PINGTV.LSE..P..TKIALITV.DKD.D.NG.V.CF...EVPF.L..V..NQ.LLE | |
| Retrocopy | DNPPNIDLRYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYLLE |
| Parental | TAAYLDYESTREYAIKLLAVDAGKPPLNQSSMLLVKGKDENDNAPVFIQPFISLSVPENNSPGTKLTKLS |
| T...LDYE.T.E...K..A.D.GKP.LNQ.....VK..DENDN.P.F.QP.I.LSV.ENN..G..LT..S | |
| Retrocopy | TSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSENNRRGLYLTTIS |
| Parental | AVDADSGHNAEINYLLGVDAPSEFNLDHRTGILTAGKKLDREKQEKYSSTVLAKYNGIPSFMTNATVLLT |
| A.D.DSG.NA.I.Y.LG..A.S.F.LD..TG.LTA....DRE.QE....TV.A..NG.P.....A.V..T | |
| Retrocopy | ATDEDSGKNADIVYQLGPNA-SFFDLDRKTGVLTASRVFDREEQERFIFTVTARDNGTPPLQSQAAVIVT |
| Parental | ILDQNDNSPIFTHNEYNFCVPENLPRHGTAGLITVTDPDYGENSTVTLSILYVNDDFTIDPQIGVIQPNI |
| .LD.NDNSP.FTHN...F.V.ENLP...T.G.ITVTD.D.GEN..VTLSIL..ND.F..DP..GVI..N. | |
| Retrocopy | VLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDADAGENKAVTLSILNDNDNFVLDPYSGVIKSNV |
| Parental | SFDREKQESYTFYVKAEDGGKVSHSSTAKVTINVVDVNDNKPVLL-PSSNNSYELVLPSTNPGTVVFTVV |
| SFDRE.Q.SYTF.VKA.DGG....SSTAKVTINV.DVNDN.PV...P.SN.S..LV..S..PG.VV..V. | |
| Retrocopy | SFDREQQSSYTFDVKATDGGQPPRSSTAKVTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVF |
| Parental | AIDDDTGMNAELHYNIVGGNTKGLFVIDQTTGNITLKEKCVVTDLGLHRLVVKAEDLGQPDSLFNVVIVN |
| A.D.DTGMNAEL.Y.IV.GN.KGLF.ID..TGNITL.EK...TD.GLHRLVV...DLG.P.SL...V.V. | |
| Retrocopy | AVDIDTGMNAELKYTIVSGNNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVF |
| Parental | LFVNESVTNATLIHELVHKNIEIPVTPNTETTDASSPTSDYVKITVAIIAGTITVIIVIFITAVVRCCQS |
| L.VN....NA..I..L.....E.P...N...........DY..I..AI.AG...VI.VIF.T..VRC... | |
| Retrocopy | LYVNDTAGNASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRHA |
| Parental | PHLKTAHKNKQNSEWVTPNPENKQKKKKKKKKKNAPKSLLLNFATIEETKADDSENDGNSATLDFPIQLE |
| ...K.A...KQ..EW..PN.ENKQ.KKKK.KK...PKS.LLNF.TIEE.K.DD........T...P..LE | |
| Retrocopy | SRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPINGTISLPAELE |
| Parental | EQTMGKYNWGTI-PTTFKPDIPDLAWHYKSASPQPAFQIQPETPLNL-KHHIIQELPLDNTFV-ACDSIS |
| EQ..G...WG...PTTFKP..PDLA.HYKSASPQPAF...P.TP....KHH.IQELPLDNTFV..CD..S | |
| Retrocopy | EQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKKHHVIQELPLDNTFVGGCDTLS |
| Parental | KCSSSSSDPYSVSGYSYSVTTFKTPASIHTRPTHRHTQWSIAQQSKIMIHTH |
| K.SS.SSD..S.S..S.S...FKT....HTR....H..WSI....K...... | |
| Retrocopy | KRSSTSSDHFSASECS-SQGGFKTKGPLHTRQVNEHFYWSISTAYKCPVNQY |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 114 .08 RPM | 7 .69 RPM |
| SRP017611_kidney | 2 .27 RPM | 2 .37 RPM |
| SRP017611_liver | 0 .71 RPM | 0 .30 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_7 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_7 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Felis catus | ENSFCAG00000023574 | 1 retrocopy |
retro_fcat_7 ,
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