RetrogeneDB ID: | retro_fcat_608 | ||
Retrocopy location | Organism: | Cat (Felis catus) | |
| Coordinates: | B1:42522629..42522995(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSFCAG00000008469 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_fcat_608
AAGCCTGCTGGGAACAGGACTCCTATGATGACAAATATGTCTAGAAGGCTGTGGTCCAAAGCCATTTTTGCTGGCTATAT
GCAGTGTCTGTGGAACCAGAGGGAACACACAGCTCTTCTTAAAATTGACAGTGTTTATGCTTGAGATGAAACTGAATTCT
ATCTAGGCAAGAGATGTGCTTATGTGTACAAAGCAAAGAAAAACATGGTGACTCCTGGTGGCAAACTGAACAAAACCAGA
GTCATCTGGGGAAAATTAACTCATGCTCATGGAAACAGTGGCATAGTTTGTGCCAAATTACAAATAAACCTTCCTACTAA
GGCCATTGGCCACAGAACCTGTGTGATGCTGTACCCCTCAAGGATT
ORF - retro_fcat_608 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 80.33 % |
| Parental protein coverage: | 99.19 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | RPAGNRTPETTNMSGRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTV |
| .PAGNRTP..TNMS.RLWSKAIFAGY...L.NQREHTALLKI..VYA.DETEFYLGKRCAYVYKAK.N.V | |
| Retrocopy | KPAGNRTPMMTNMSRRLWSKAIFAGYMQCLWNQREHTALLKIDSVYA*DETEFYLGKRCAYVYKAKKNMV |
| Parental | TPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI |
| TPGGK.NKTRVIWGK.T.AHGNSG.V.AK...NLP.KAIGHR..VMLYPSRI | |
| Retrocopy | TPGGKLNKTRVIWGKLTHAHGNSGIVCAKLQINLPTKAIGHRTCVMLYPSRI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 33 .05 RPM |
| SRP017611_kidney | 0 .00 RPM | 153 .25 RPM |
| SRP017611_liver | 0 .10 RPM | 88 .15 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_608 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_608 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 36 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Felis catus | ENSFCAG00000008469 | 36 retrocopies |
retro_fcat_1042, retro_fcat_1056, retro_fcat_1074, retro_fcat_1208, retro_fcat_1212, retro_fcat_1238, retro_fcat_1242, retro_fcat_1272, retro_fcat_1303, retro_fcat_1447, retro_fcat_1486, retro_fcat_1494, retro_fcat_150, retro_fcat_1529, retro_fcat_1553, retro_fcat_1589, retro_fcat_1593, retro_fcat_1616, retro_fcat_163, retro_fcat_1633, retro_fcat_1731, retro_fcat_1962, retro_fcat_199, retro_fcat_209, retro_fcat_217, retro_fcat_250, retro_fcat_294, retro_fcat_346, retro_fcat_347, retro_fcat_408, retro_fcat_535, retro_fcat_608 , retro_fcat_621, retro_fcat_679, retro_fcat_764, retro_fcat_813,
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