RetrogeneDB ID: | retro_etel_982 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_195295:529..1434(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSETEG00000009837 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | DNAJB4 | ||
| Ensembl ID: | ENSETEG00000006777 | ||
| Aliases: | None | ||
| Description: | DnaJ (Hsp40) homolog, subfamily B, member 4 [Source:HGNC Symbol;Acc:14886] |
Retrocopy-Parental alignment summary:
>retro_etel_982
ATGGGCAAGGACTACTACCAGACGCTGGGCTTGGCCCGCGGTGCATCAGACGAGGAGATCAAACGGGCCTACCGCCGCCA
GGCGCTGCGCTACCACCCGGACAAGAGCAAGGAGCCCGGCGCCGAGGAGAAGTTCAAGGAGATCGCCGAGGCCTACGACG
TGTTCAGCGACTCGCGCAAGCGCGAGATCTTTGACCGCTACGGGGAGGAAGGCCTAAAGGGTGGCGGTCCCAGTGGCGGG
AGCAGTGGCGGTGCTAATGGGACCTCATTCAGCTACACGTTCCATGGAGACCCTCATGCTATGTTCGCTGAGTTCTTCTG
TGGCCGAAATCCCTTTGATACTTTTTTTGGGCAGCGGAACTGGGAAGACATGGACATTGACGACCCGTTTTCTGGCTTCC
CCATGGGCATGAGTGGCTTCACCAACATGAACTTTGGCTGCTCCCGTCCCACCCAGGAACCCACCCGAAAGAAACAAGAT
CCCTCTGTCACCCATGACCTCAGAGTCTCACTGGAAGAAATCTACAGTGGCTGTACCAAAAAAATGAAGATCTCTCACAA
GCGGCTGAACCCCGACGGAAAGAGCATCCGCAACGAAGACAAGATCTTGACGATCGAAGTGAAGAGGGGGTGGAAAGAAG
GGACCAAAATCACCTTCCCCAAGGAAGGAGACCAGACTTCCAGCAACATTCCAGCTGACATCGTCTTTGTTTTAAGGACA
AGCCCCACAATATCTTTAAGAGAGATGGCTCTGACGTCGTGTACCCAGCCAGGGTCAGCCTCCGGGAGGCTCTGTGTGGC
TGCACGGTGAATGTCCCCACTCTGGACTGCAGGACCATACCCGTCGTGTTCAAAGATGTCATCAGGCCTGGCATGCGGCG
GAAAGTTCCTGGAGAAGGCCTCCCC
ORF - retro_etel_982 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.16 % |
| Parental protein coverage: | 88.72 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | MGKDYYGILGIEKGASEEDIKKAYRKQALRFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEE |
| MGKDYY..LG...GAS.E.IK.AYR.QALR.HPDK.K.P.AEEKFKE.AEAY.V.SD..KREI.D..GEE | |
| Retrocopy | MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKSKEPGAEEKFKEIAEAYDVFSDSRKREIFDRYGEE |
| Parental | GLKGG--AGGTDG--QGGTFRYTFHGDPHATFAAFFGGSNPFDIFFGRRMAGGRDPEDMEVDGDPFSAFG |
| GLKGG...GG..G...G..F.YTFHGDPHA.FA.FF.G.NPFD.FFG.R.....D..D....G.P....G | |
| Retrocopy | GLKGGGPSGGSSGGANGTSFSYTFHGDPHAMFAEFFCGRNPFDTFFGQRNWEDMDIDD-PFSGFPMGMSG |
| Parental | FSMNGYPRDRNSVGPSRLKQDPPIIHELRVSLEEIYSGCTKRMKISRKRLNPDGRSYRSEDKILTIEIKK |
| F........R....P.R.KQDP...H.LRVSLEEIYSGCTK.MKIS.KRLNPDG.S.R.EDKILTIE.K. | |
| Retrocopy | FTNMNFGCSRPTQEPTRKKQDPSVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKR |
| Parental | GWKEGTKITFPREGDETPNSIPADIVFII-KDKDHPKFKRDGSNIIYNAKISLREALCGCSIDVPTMDGR |
| GWKEGTKITFP.EGD.T...IPADIVF...KDK.H..FKRDGS...Y.A..SLREALCGC...VPT.D.R | |
| Retrocopy | GWKEGTKITFPKEGDQTSSNIPADIVFVL<KDKPHNIFKRDGSDVVYPARVSLREALCGCTVNVPTLDCR |
| Parental | TIPMSLNDIVKPGMRRRIIGYGLP |
| TIP....D...PGMRR...G.GLP | |
| Retrocopy | TIPVVFKDVIRPGMRRKVPGEGLP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_982 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000006777 | 1 retrocopy |
retro_etel_982 ,
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