RetrogeneDB ID: retro_etel_858

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_177036:3555..3906(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000003813
• Aliases: None
• Description: None

Sequence

>retro_etel_858
TGGGGTCCTTTAATACTTGTTCCTAAGACTCCAGGGGTCCTGTCCCACATGCAGCTACAGGAATCAGTTGCTCAGGTGGT
GAAGCCTTCACAGACCCTCACTCTTACCTGCATCATCACTAAGGACTTTGTCTCCAGAACCAGTGCTACTTGGGATTGGA
TCAGGCAGAACCCTGAGGGAGGTTGTGAGTGGAGGAGAAGGATCTTCTATGGGTCAGAGTGGTTTATCGAATACACACCA
TCTCCCAGAGACCATACAGTCATTGAACTAGACACATCCAAGATCCAGCTCTCCCTGAAGCTGAGCTCTGTGACCACTGA
CGACTAGTGTGCAAGGACCAAGGAGAGGAAA

Alignment

ORF - retro_etel_858 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.96 %
• Parental protein coverage: 79.29 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  WVFLFLVATPGGFLAQVQL-ESGPGLLKPSQTLTLTCIITKGFVSRTSYL-GWIRQNPGRHCEWRRRTFY
          W..L.LV....G.L...QL.ES.....KPSQTLTLTCIITK.FVSRTS....WIRQNP...CEWRRR.FY
Retrocopy WGPLILVPKTPGVLSHMQLQESVAQVVKPSQTLTLTCIITKDFVSRTSATWDWIRQNPEGGCEWRRRIFY

Parental  SGS---KYTPSLIDHIVIDLDTSKIQLSLKLSSVTTDD-TARAKKRK
          .......YTPS..DH.VI.LDTSKIQLSLKLSSVTTDD..AR.K.RK
Retrocopy GSEWFIEYTPSPRDHTVIELDTSKIQLSLKLSSVTTDD*CARTKERK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_858 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000003813	1 retrocopy	retro_etel_858 ,