RetrogeneDB ID: retro_etel_8

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_169727:808..1156(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000000403
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000000023
• Aliases: None
• Description: None

Sequence

>retro_etel_8
ATGAGCGGGGAACCGGGGGCCGTATCCTTAGCGCCCCCTCCCGGAGAGGCCGAACCGGGCAGTGGGGTTCGCATCGTGGT
GGAGTATTGTGAACCCTGCGGCTTTGAGGCCACCTACCTGGAGCTGGCGAGCGCCGTGAAGGAGCAGTACCCCGGCATCG
AGATCGAGTCGCGCCTCGGGGGGACAGGGGCCTTTGAGATCGAAATCAACGGGCAATTGGTGTTTTCCAAGCTAGAGAAT
GGGGGCTTCCCACATGAGAAAGATCTCATCGAGGCCATCCGAAGAGCCAGTAATGGGGAACCCCTAGAAAAGATCACCAG
CAGCCGTCCTCCCTGTGCCATTCTGTGA

Alignment

ORF - retro_etel_8 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.71 %
• Parental protein coverage: 97.03 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSGEPGPVSLAPPPGEAEPGSGVRIVVEYCEPCGFEATYLELASAVKEQYPGIEIESRLGGTGAFEFEIN
          MSGEPG.VSLAPPPGEAEPGSGVRIVVEYCEPCGFEATYLELASAVKEQYPGIEIESRLGGTGAFE.EIN
Retrocopy MSGEPGAVSLAPPPGEAEPGSGVRIVVEYCEPCGFEATYLELASAVKEQYPGIEIESRLGGTGAFEIEIN

Parental  VQYVFSKLESEVFLSDTHLIEASRRTSN
          .Q.VFSKLE...F.....LIEA.RR.SN
Retrocopy GQLVFSKLENGGFPHEKDLIEAIRRASN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_8 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000000023	1 retrocopy	retro_etel_8 ,
Vicugna pacos	ENSVPAG00000000476	1 retrocopy	retro_vpac_141,