RetrogeneDB ID: retro_etel_664

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_136645:1..446(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000001161
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000006093
• Aliases: None
• Description: None

Sequence

>retro_etel_664
CCCGGGATCCTGAAAACTTCCCCTTTGTTGTGTCGGGAACAACCTTGACGTCGAAAACAGACAAGTCGGCACGAAGCGAG
CACAGGCCTGGTGCTACAGTAAAAATAATATTCCCTACTTTGAGACGACTGCAAAGGCAGCCAGCAACGTGGAGCATGGC
CTTTGAGACGATTCCAGGAACGCGCTTAAACAGGAAACCCGTGGAGCTGTACAACGAATTCCCTGAGCCCGTCAAACTGG
ACAAGAATGACCGGGCCAAGGGCTCCGCGGAAAGCTGCAGTTGCTGAAGGGGCAGTGAGAATAGAGCGCAGAGCCCTTCA
CAAGCCAAGAACACACGGAGGCCTTCAAACACAAGCCCCCTTGCCTATTCCAAACAAAACCTGAATTGGTCTCTCGTATC
CAGCTGCCAAAAGAACCCCCACCCAACAAGCTCACCCCGGTAGAC

Alignment

ORF - retro_etel_664 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.51 %
• Parental protein coverage: 68.54 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  PGILKTSPLLCWE-TRLTLKTDKLPQSEHRPGATVKTTSPTLRLVQRKPSTWSRPFRRLPGTH-LNRKQR
          PGILKTSPLLC.E.T.LT.KTDK...SEHRPGATVK...PTLR..QR.P.TWS..F...PGT..L....R
Retrocopy PGILKTSPLLCRE<TTLTSKTDKSARSEHRPGATVKIIFPTLRRLQRQPATWSMAFETIPGTR<LKQETR

Parental  -WSCTTNSLSPSNWTRMTGPRPQRKAAVAEGAVRIE-HVLHKPRTHLGLQ-HKPPCLFQTKPELVSRIQL
          .WSCTTNSLSPSNWTRMTGPR..RKAAVAEGAVRIE...LHKPRTH.GLQ.HKPPCLFQTKPELVSRIQL
Retrocopy <WSCTTNSLSPSNWTRMTGPRAPRKAAVAEGAVRIERRALHKPRTHGGLQ>HKPPCLFQTKPELVSRIQL

Parental  PKE--PTQSTPID
          PKE..P...TP.D
Retrocopy PKEPPPNKLTPVD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_664 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000006093	1 retrocopy	retro_etel_664 ,