RetrogeneDB ID: retro_etel_63

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: GeneScaffold_1074:90906..91297(-)
• Located in intron of: ENSETEG00000008754

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: IAH1
• Ensembl ID: ENSETEG00000003899
• Aliases: None
• Description: isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:27696]

Sequence

>retro_etel_63
GGCTATAATACCAGATGGGCCAAAATCATTCTCCCGAGAATCATTGGGAAGGGTAGTAGTCTGGACCGCCCTGTAGCAGT
TACAGTTTTCTTTGGTGCCAATGACAGTGCTTTAAAAGATGAGAATCCTAAGCAACACATCCGCTGGAGGAGTACCTGGA
CAATTTCAAGAGCATGGTGCAGTACCTGAAGTCTGTGGAAATCCCGGAGAACTGAGTGACCCTCATCACGCCGCCGCCTC
TTTGTGAGACAGCTGGGAAAAGGAGTGCATCCTACAAGGTTGCAAATTAAATCGCCTAAACTTGGTTACGGGTGAATATG
CCAAGGCCCGTTTACAAGTAGCTCAAGCCTGCAGGACTGATGCACTCGACCTGTGGACCCTGATGCAGGAG

Alignment

ORF - retro_etel_63 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.47 %
• Parental protein coverage: 75.29 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GYNTRWAKIILPRIIGNGSGLDRPVAVTIFFGANDSALKDENPKQHI-PLEEYLDNLKSMVQYLKSVDIP
          GYNTRWAKIILPRIIG.GS.LDRPVAVT.FFGANDSALKDENPKQHI.PLEEYLDN.KSMVQYLKSV.IP
Retrocopy GYNTRWAKIILPRIIGKGSSLDRPVAVTVFFGANDSALKDENPKQHI<PLEEYLDNFKSMVQYLKSVEIP

Parental  EKRVILITPPPLCETA-WEKECILQGCKLNRLNLVTGEYAKACLQAARDCGTGVLDLWTLMQD
          E..V.LITPPPLCETA.WEKECILQGCKLNRLNLVTGEYAKA.LQ.A..C.T..LDLWTLMQ.
Retrocopy EN*VTLITPPPLCETA<WEKECILQGCKLNRLNLVTGEYAKARLQVAQACRTDALDLWTLMQE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_63 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Erinaceus europaeus	ENSEEUG00000003840	1 retrocopy	retro_eeur_158,
Echinops telfairi	ENSETEG00000003899	2 retrocopies	retro_etel_629, retro_etel_63 ,
Ictidomys tridecemlineatus	ENSSTOG00000004500	1 retrocopy	retro_itri_219,