RetrogeneDB ID: | retro_etel_604 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_102297:629..1379(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSETEG00000013262 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | CORO1A | ||
| Ensembl ID: | ENSETEG00000018964 | ||
| Aliases: | None | ||
| Description: | coronin, actin binding protein, 1A [Source:HGNC Symbol;Acc:2252] |
Retrocopy-Parental alignment summary:
>retro_etel_604
GACCTCATCTACAACGTGTGCTGGAACCACAACGGTAGCCTCTTCTGCTCTGCCTGCAAGGACAAGAGCGTGCGCATCAT
CGACCCCCGCCGGGGCACCCTGGTGGCGGAGCGGGAGAAGGCCCACGAGGGCGCCAGGCCCATGCGGGGCCGTCTTCCTA
GCGGATGGCAAGGTGCTCACCACAGGATTCAGCCGTATGAGTGAGTGGCAGCTGGCACTCTGGGGCCCCGACAACCTGGA
GGAGCCCATGGCTCTGCAGGAGCTGGATTCCAGCAACAGGACCCTGCTGCCCTTCTACGACCCGGACACCAGCGTGGTCT
ATGTCTGTGACTCCAGCATCCGGTACTTTGAGATCACCAATGAGGCCCCCTACATCCACTTCCTGAACACCTTCACCAGC
AAAGAGCCGCAGAGGGGCATGGGCAGCATGCCCAAGAGGGGCTTGGAGGTCAGCAAGTGTGAGATTGCCCGGTTCTATAA
GCTTCATGAGCCCAAGTGTGAGCCCATTGTCATGACTGTGCCAAGAAAGTCGGACCTTTTCCGGATGACCTGCACCCTGA
CACAGCAGGGCCCGAGGCGGCCCTGGAAGCAGAGGAGTGGGTGAGCGGCCGGGCTGCTGACCCCATCCTCATCTCCCTGC
GGGAGGCTTACGTCCCCAGCAAGCAGGGAGACCTGAAGGTCAGCCGGCAGAATGTGCTGTCAGACAGCCGGCCCTCCGCC
ACCCCCGCCCTGACCACTACCAGCAGCAGC
ORF - retro_etel_604 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 61.81 % |
| Parental protein coverage: | 58.49 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | DTIYSVDWSRDGGLICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVH-AVFVSDGKILTTGFSRMSER |
| D.IY.V.W...G.L.C..C.DK.VR.I.PR.GT.VAE....HEG.RP...AVF..DGK.LTTGFSRMSE. | |
| Retrocopy | DLIYNVCWNHNGSLFCSACKDKSVRIIDPRRGTLVAEREKAHEGARPMR>AVFLADGKVLTTGFSRMSEW |
| Parental | QVALWDTKHLSEPLSLQELDTINGR-RPFFELD-NIVYHCGGDSSIRYFEITSEAPYLHYLCMFSSKESQ |
| Q.ALW....L.EP..LQELD..N....PF...D...VY.C..DSSIRYFEIT.EAPY.H.L..F.SKE.Q | |
| Retrocopy | QLALWGPDNLEEPMALQELDSSNRTLLPFYDPDTSVVYVC--DSSIRYFEITNEAPYIHFLNTFTSKEPQ |
| Parental | RGMGYMPKRGLEVNKCEIARFYKLHERKCEPIAMTVPRKSDLFQ-EDLYPPTAGPDPALTAEEWFGGRDA |
| RGMG.MPKRGLEV.KCEIARFYKLHE.KCEPI.MTVPRKSDLF...DL.P.TAGP..AL.AEEW..GR.A | |
| Retrocopy | RGMGSMPKRGLEVSKCEIARFYKLHEPKCEPIVMTVPRKSDLFR<DDLHPDTAGPEAALEAEEWVSGRAA |
| Parental | GPLLISLKDGYVPSKSRELRVNRG--LDSGRRRAAPESCGTPSS |
| .P.LISL...YVPSK...L.V.R...L...R..A.P....T.SS | |
| Retrocopy | DPILISLREAYVPSKQGDLKVSRQNVLSDSRPSATPALTTTSSS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_604 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000018964 | 2 retrocopies |
retro_etel_1113, retro_etel_604 ,
|