RetrogeneDB ID: retro_etel_58

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: GeneScaffold_8643:75903..76275(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000015997
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000002472
• Aliases: None
• Description: None

Sequence

>retro_etel_58
ATGGCATCTGAGACAGAGCACCTCCCCCTGGGTGTGTTCGAGTGTCATCTGTGTGCTTTGTCAGCTCCATACAGCTATGT
GGGGCAGAAGCCCCCCAACACCTGGTCTGTCTTCCTGCTGGAGGAGAGCTATGTCCTGAAGGACCCTTTCACCGCCAACA
AGGACAAATTCCTTGTCCTTGGCTCCCGATGCAACGTATGTAGCAGGCTGGTGTGCATGGGCCCGGAGTGCAGTGTGTTC
TACGCCAAGAGATTCTGCCTCCCTTGTGTCTGGGAGAACATTGTTGCTTTCCCTCAGGAAATCCGGCAAGACGTGGAGAA
GCAGAAGACCACGGCAAAGATGCCCTGCAGCAAGCCCAGCTTTCGGACCTGA

Alignment

ORF - retro_etel_58 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.12 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MASETEHLPLGVFECHLCALSAPYSYVGQKPPNTRSVFLLEESYVLKDPFAANKDKFLVLGSRCNVCSRL
          MASETEHLPLGVFECHLCALSAPYSYVGQKPPNT.SVFLLEESYVLKDPF.ANKDKFLVLGSRCNVCSRL
Retrocopy MASETEHLPLGVFECHLCALSAPYSYVGQKPPNTWSVFLLEESYVLKDPFTANKDKFLVLGSRCNVCSRL

Parental  VCVGPECSVFYAKRFCLPCVWENIAAFPQEIRQDVEKRKTTAKMPCNKPSFRT
          VC.GPECSVFYAKRFCLPCVWENI.AFPQEIRQDVEK.KTTAKMPC.KPSFRT
Retrocopy VCMGPECSVFYAKRFCLPCVWENIVAFPQEIRQDVEKQKTTAKMPCSKPSFRT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_58 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000002472	1 retrocopy	retro_etel_58 ,
Loxodonta africana	ENSLAFG00000008671	1 retrocopy	retro_lafr_930,