RetrogeneDB ID: | retro_etel_553 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | GeneScaffold_9005:76652..76957(-) | ||
| Located in intron of: | ENSETEG00000013127 | ||
Retrocopy information | Ensembl ID: | ENSETEG00000013132 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | TSLP | ||
| Ensembl ID: | ENSETEG00000016511 | ||
| Aliases: | None | ||
| Description: | thymic stromal lymphopoietin [Source:HGNC Symbol;Acc:30743] |
Retrocopy-Parental alignment summary:
>retro_etel_553
CAGAGCACAAGGACCCAGTCCGTCCAGGTCCAGCACACGTTCTGTAGAAATCAGGAGTCAGGGTGCTTGAATTTGATCAT
GAACAATAACCTTCAATCCCGAACCTGGCTGCCTGTCCCTGGCCACGGAAACCTTTGCAATTTTAACGAGGGAGACCCTG
ATTCTGTGGTGCCCTGGCTACGAGGCCAGTCAGGTAAATAATACCCAGAAAACGAAGACGAGCAAAAGAGAAGTTAAGCC
AAGATGTCGGGGAAAAAGTCTTAGACCTAATCGTATTGTGGCGCCATTTCATTCGATATTTGCAG
ORF - retro_etel_553 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 67.31 % |
| Parental protein coverage: | 66.44 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | RSTSTQSGS--SSFCSNQ-FGCLNLIVN-ITFNPVPGCPSLARETFAISTREILIQRCPGYDTSQVNNAQ |
| .ST.TQS......FC.NQ..GCLNLI.N.ITFNP.PGC.SLA.ETFAI.TRE.LI..CPGY..SQVNN.Q | |
| Retrocopy | QSTRTQSVQVQHTFCRNQESGCLNLIMN>ITFNPEPGCLSLATETFAILTRETLILWCPGYEASQVNNTQ |
| Parental | KMKQSKIEVKPRRCR-EKVSDLMALWRQFIQYLR |
| K.K.SK.EVKP.RCR.EKV.DL..LWR.FI.YL. | |
| Retrocopy | KTKTSKREVKP-RCR>EKVLDLIVLWRHFIRYLQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_553 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000016511 | 1 retrocopy |
retro_etel_553 ,
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