RetrogeneDB ID: | retro_etel_529 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | GeneScaffold_8831:149997..150340(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | CXCL17 | ||
| Ensembl ID: | ENSETEG00000009939 | ||
| Aliases: | None | ||
| Description: | chemokine (C-X-C motif) ligand 17 [Source:HGNC Symbol;Acc:19232] |
Retrocopy-Parental alignment summary:
>retro_etel_529
CTCCTTCTGTTGTTGCCAATTAACACCAATGTCCAGGGTCTCTAGCAGCCCAAATCCAGGGTCGCCAGAGACCACCAGGG
CCAGCGCCAGGGCTTAGGGAGGTGGCTCTAGGAAGGCAAGCTATGTTGTGAATGCAAACACCAGCTCCAAAAAGTCCCTA
AGGAAAATTTATGACACTAGCAGTGCCGGGGTTGCCAAAGAAATGGTGTCCTTGTGATCACTTCATGAGCAATGTGAAGA
AAAATGGGCATCGAAGGCACCACAGGAAGTCAAACAAGTACTCCAGGCCAGAGGCTGCCAGCAGTTTCTCCAACAGTGCC
AGCTGCCAAGCTTGGCCCTGCCC
ORF - retro_etel_529 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 73.95 % |
| Parental protein coverage: | 93.39 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 4 |
Retrocopy - Parental Gene Alignment:
| Parental | LLLLLP-LTLMHGVSSSPNPG-VARGHRGQRQASGRRLQEGGLECECKDQFQKLPK-GKFMALAVLGSPK |
| LLLLLP.LT.M..VSSSPNPG.VAR.H.GQRQ..GR.L.EG.L.CECK.Q.QK.PK.GKFM.LAV.G.PK | |
| Retrocopy | LLLLLP>LTPMSRVSSSPNPG<VARDHQGQRQGLGRWL*EGKLCCECKHQLQKVPK<GKFMTLAVPGLPK |
| Parental | KQCPCDHFMSNMKKNRHRRHHRKSNKYFR--ACQQF-LQQCQLASLALP |
| K.CPCDHFMSN.KKN.HRRHHRKSNKY.R..A...F.LQQCQL.SLALP | |
| Retrocopy | KWCPCDHFMSNVKKNGHRRHHRKSNKYSRPEAASSF<LQQCQLPSLALP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_529 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000009939 | 1 retrocopy |
retro_etel_529 ,
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