RetrogeneDB ID: | retro_etel_449 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | GeneScaffold_7419:61387..62100(+) | ||
| Located in intron of: | ENSETEG00000012566 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | DNAJC3 | ||
| Ensembl ID: | ENSETEG00000003185 | ||
| Aliases: | None | ||
| Description: | DnaJ (Hsp40) homolog, subfamily C, member 3 [Source:HGNC Symbol;Acc:9439] |
Retrocopy-Parental alignment summary:
>retro_etel_449
AGTGAAAATGAGGAAAAGGAAGCCCAGGCCCAACTTTTGAAGTCTGATGAAATGCAACACTGCTGCTCACAGCACGTTAA
GCTTTCGAAGATGCAGATTAAACTGCTGCCATCACCTTCCTTGATAAGATGGTAGAGGTTTGTGTTTGGGATGCAGACTT
ATGAGAACTTCGAGCTGAAGGTTTCATGAAAGGAAGGGAACCTAAGAAAGCCATCAGTGATTTAAAAGCTGCATCCAAAT
TGAAGAATGGTAACCCAGAGGCCTTTCGTAAAATCAGCACACTGTACTACCAACTAGGAGACCATGAAATGTCCCTCAGT
GAAGTCCGTGAATGTCTTAAACTTGACCAGGATCATAAAAGGTGTTTTGCACACTATAAATAAGTGAAGAAACTGAGTAA
GCTGATTGAGTCACCCGAAGAGCTCATCAGAGGTGGCAGGTACATGGATGCGACCAGCAAATATTAATCTGTAATGAAAA
CAGAGCCAAGTGTTTCTGATTATATAATTCATTCAAAAGAAAAAATCTGCCACTGCTTTTCTAAGGACGAGAAGCCTGTT
GAAGCTCTTACAACCTGTTCTGACGTTTTATAGCTGGAACCTCATAATGTGAATGCTCTGAAAGAGCAAGCAGAGGCCTA
TTATATAGAGGAAATGTATGATGAAGCTATGGAGGGTTATGAAACTGCTCAGGAGCACAATGAAAAGGACCAG
ORF - retro_etel_449 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 79.92 % |
| Parental protein coverage: | 52.08 % |
| Number of stop codons detected: | 6 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | SENEEKEAQAQLLKSGEMQHLRSQ-ALYAFEGADYTAAITFLDTILEVCVWDADLRELRAECFIQEGEPR |
| SENEEKEAQAQLLKS.EMQH..SQ.A..AFE.AD.TAAITFLD...EVCVWDADL.ELRAE.F....EP. | |
| Retrocopy | SENEEKEAQAQLLKSDEMQHCCSQ<AR*AFEDAD*TAAITFLDKMVEVCVWDADL*ELRAEGFMKGREPK |
| Parental | KAISDLKAASKLKNDNTEAFYKISILYYQLGDHEMSLSEVRECLKLDQDHKRCFAHYKQVKKLSKLIESA |
| KAISDLKAASKLKN.N.EAF.KIS.LYYQLGDHEMSLSEVRECLKLDQDHKRCFAHYK.VKKLSKLIES. | |
| Retrocopy | KAISDLKAASKLKNGNPEAFRKISTLYYQLGDHEMSLSEVRECLKLDQDHKRCFAHYK*VKKLSKLIESP |
| Parental | EELIRDGRYTEATSKYESVMKTEPSVSEYTIRSKERICHCFSKDEKPVEAIRTCSEVLQLEPDNVNALKD |
| EELIR.GRY..ATSKY.SVMKTEPSVS.Y.I.SKE.ICHCFSKDEKPVEA..TCS.VL.LEP.NVNALK. | |
| Retrocopy | EELIRGGRYMDATSKY*SVMKTEPSVSDYIIHSKEKICHCFSKDEKPVEALTTCSDVL*LEPHNVNALKE |
| Parental | RAEAYLIEEMYDEAIQDYGIAQEQNENNQ |
| .AEAY.IEEMYDEA...Y..AQE.NE..Q | |
| Retrocopy | QAEAYYIEEMYDEAMEGYETAQEHNEKDQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_449 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000003185 | 1 retrocopy |
retro_etel_449 ,
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