RetrogeneDB ID: retro_etel_2204

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_97981:2530..3379(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000017173
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ABHD5
• Ensembl ID: ENSETEG00000012926
• Aliases: None
• Description: abhydrolase domain containing 5 [Source:HGNC Symbol;Acc:21396]

Sequence

>retro_etel_2204
AAATTCTCTTATAATATTCCAAACAAGACACCACTTGTCCTCCTCCATGGTTTTGGAGGAGGGCTTGGACTCTGGGTGCT
AAATTTTGAGGATCTTTCCACTAATCGGCCTGTTTATGCATTTGACCTGCTGGGCTTTGGACGAAGTAGTAGACCCTGGT
TTGACAGTGATGCAGAAGAAGTGGAGAACCAGTTTGTAGAATCCATTGAAGAGTAGAGATATGCCCTAGGATTGGACAAG
TTAATCTTGCTTGGACACAACCTGGGTGGATTCTTGGCTGCTGCTTACGCACTAAAGTATCCATCAAGGGTTAATCATCT
CATTTTAGTGGAGCCTGGGGGTTTTCCTGAGAGACCTGACCTTGCTGACCAAGACAGACCCATCCCGGTGTGGATCAGAG
CCTTGGGCGCTGTGCTGACTCCTTTTAACCCTTTAGGTGGCCTCAGAATCGCAGGACCCTTTGGCTTAAGTTTAGTGTAA
CGTTTAAGACCCGATTTCAAGAGGAAGTATTTATCCATGTTTGAAGATGAAACTGTGACCGAGTACATCTACCACTGCAA
TGTCCAGACTCCAAGTGGTGAAACAGCTTTCAAAAATATGACGATTCCTTACGGATGGGCAAAAAGGCCAATGCTCCTGC
GAATCGGTAAAATGCACGCTGACATCCCGGTCTCAGTCATCTATGGCGCCCGGTCCTGCATAGATGGCAACTCCGGCAGC
AGCATCCAGTCCCTGCGACCACACTCATACGTGAAGACCATAGCCATCCTTGGAGCGGGGCACTACGTGTATGCAGACCA
GCCAGAAGACTTCAACCAGAAGGTGACGGACATCTGCAACACCGTAGAC

Alignment

ORF - retro_etel_2204 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.82 %
• Parental protein coverage: 84.98 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KFSYNIPNKTPLVLLHGFGGGLGLWALNFEDLSTNRPVYAFDLLGFGRSSRPRFDSDAEEVENQFVESIE
          KFSYNIPNKTPLVLLHGFGGGLGLW.LNFEDLSTNRPVYAFDLLGFGRSSRP.FDSDAEEVENQFVESIE
Retrocopy KFSYNIPNKTPLVLLHGFGGGLGLWVLNFEDLSTNRPVYAFDLLGFGRSSRPWFDSDAEEVENQFVESIE

Parental  EWRYALGLDKLILLGHNLGGFLAAAYALKYPSRVNHLILVEPWGFPERPDLADQDRPIPVWIRALGAALT
          E.RYALGLDKLILLGHNLGGFLAAAYALKYPSRVNHLILVEP.GFPERPDLADQDRPIPVWIRALGA.LT
Retrocopy E*RYALGLDKLILLGHNLGGFLAAAYALKYPSRVNHLILVEPGGFPERPDLADQDRPIPVWIRALGAVLT

Parental  PFNPLAGLRIAGPFGLSLVQRLRPDFKRKYLSMFEDETVTEYIYHCNVQTPSGETAFKNMTIPYGWAKRP
          PFNPL.GLRIAGPFGLSLV.RLRPDFKRKYLSMFEDETVTEYIYHCNVQTPSGETAFKNMTIPYGWAKRP
Retrocopy PFNPLGGLRIAGPFGLSLV*RLRPDFKRKYLSMFEDETVTEYIYHCNVQTPSGETAFKNMTIPYGWAKRP

Parental  MLLRIGKMHADIPVSVIYGARSCIDGNSGSSIQSLRPHSYVKTIGILGAGHYVYADQPEDFNQKVTEICN
          MLLRIGKMHADIPVSVIYGARSCIDGNSGSSIQSLRPHSYVKTI.ILGAGHYVYADQPEDFNQKVT.ICN
Retrocopy MLLRIGKMHADIPVSVIYGARSCIDGNSGSSIQSLRPHSYVKTIAILGAGHYVYADQPEDFNQKVTDICN

Parental  TVD
          TVD
Retrocopy TVD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_2204 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000012926	1 retrocopy	retro_etel_2204 ,
Monodelphis domestica	ENSMODG00000015241	1 retrocopy	retro_mdom_303,
Mustela putorius furo	ENSMPUG00000012931	1 retrocopy	retro_mputfur_1264,