RetrogeneDB ID: | retro_etel_2140 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_73913:313..1007(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSETEG00000003144 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | BCL10 | ||
| Ensembl ID: | ENSETEG00000005322 | ||
| Aliases: | None | ||
| Description: | B-cell CLL/lymphoma 10 [Source:HGNC Symbol;Acc:989] |
Retrocopy-Parental alignment summary:
>retro_etel_2140
ATGGAGCCTGCCATGCTGTTCCTCACCAAGGAGACCGGACTGAAGTGCAGCAGGACACATGGGAAAACTTACATGTATAC
CGCTGTGAAAACATCGTAGCTCAGACACATTTTGATCACCTACGTGCAATAAACAAAACACGCCGTAGAGAAGACACTGA
ATACACTTCTTGTCAAACAGCAAGTAGAAAAAGAGCTGGAAAACTGCTAAGGCTGCTGACAAGAAAACCCCAAAGGACTG
GATACCCTGCTTGAATCTATTCGGCGAGAAAAACCACGGAACTTCCTGATCCAGAAGATTACAGATGAAGTGCTGACACT
TAGGAATCTCACACTAGAACACTCTGAAAGGACGGAAGTGTAGCAGCTGTGAGCCTTTTCCAGATGGAGCTACAAACTAC
CTCTCTGAACCAAATTCAGGTGAGAGGACTTTCTCAGCAAAACTGTGGGCGCCCACTGACCTATACCATGCAGAAGGGGA
ATCCAGCACAGCCCCCTTTTCCTACTGATTCGTCTCTGAATTTGCCTCTTCTAGAAGAAGGCAGAAGTGACAATACTATC
TTTTCTTCAGTGTCTCTGCCCAGGCCTGGGCACCCTGGGGCTTCTCCTTTGACACCGAAGTGCCATTAGAAGGAGAAACT
TGTGGAAACTGGAGTGTGCTGTTCCTTCCCTTAAGATCACGTGCTGTGTCAGGG
ORF - retro_etel_2140 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 71.31 % |
| Parental protein coverage: | 99.57 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 5 |
Retrocopy - Parental Gene Alignment:
| Parental | MEPTAPFLTEE-DLTEVKKDALENLRVYLCEKIIAERHFDHLRA-KKILSREDTEEISCRTSSRKRAGKL |
| MEP...FLT.E.D.TEV..D..ENL.VY.CE.I.A..HFDHLRA..K...REDTE..SC.T.SRKRAGKL | |
| Retrocopy | MEPAMLFLTKE<DRTEVQQDTWENLHVYRCENIVAQTHFDHLRAINKTRRREDTEYTSCQTASRKRAGKL |
| Parental | LDYL-QENPKGLDTLLESIRREKTQNFLIQKITDEVLKLRNIKLEH-LKGLKCSRCEPHPDEATNNLSGP |
| L..L.QENPKGLDTLLESIRREK..NFLIQKITDEVL.LRN..LEH.LKG.KCS.CEP.PD.ATN.LS.P | |
| Retrocopy | LRLL>QENPKGLDTLLESIRREKPRNFLIQKITDEVLTLRNLTLEH>LKGRKCSSCEPFPDGATNYLSEP |
| Parental | NSDESNFSEKLRASTDIYHPE-GESSTAPFFSTDSSLNLPVLEVGRTDNTIFSSVSLPRPGDPGAPPLPP |
| NS.E..FS.KL.A.TD.YH.E.G.....PF..TDSSLNLP.LE.GR.DNTIFSSVSLPRPG.PGA.PL.P | |
| Retrocopy | NSGERTFSAKLWAPTDLYHAE>GNPAQPPF-PTDSSLNLPLLEEGRSDNTIFSSVSLPRPGHPGASPLTP |
| Parental | -ELQLEGETCGNSSEMFLPLRSRAVSG |
| .E..LEGETCGN.S..FLPLRSRAVSG | |
| Retrocopy | <EVPLEGETCGNWSVLFLPLRSRAVSG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_2140 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000005322 | 2 retrocopies |
retro_etel_1638, retro_etel_2140 ,
|