RetrogeneDB ID: | retro_etel_2005 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_324019:2455..2800(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | CHCHD4 | ||
| Ensembl ID: | ENSETEG00000000065 | ||
| Aliases: | None | ||
| Description: | coiled-coil-helix-coiled-coil-helix domain containing 4 [Source:HGNC Symbol;Acc:26467] |
Retrocopy-Parental alignment summary:
>retro_etel_2005
AGCAGTGCAGAGCTGGAGGCTGAAGACCTCACGGATCCTTACAGGAGCACGGATTGATACTGCCCAAAGGAGACATTAAC
CGGAACTGCCCATGCCTTGCAGGAATGGCCAGCGGCCCCTCTGGTGAGCAGTTCAAGTCCGCCTTCTTCTGCTTCCACTA
CAGCCCTGAGAATGTAGAGCGGCAGACAGTGCAGACCAGTCCCGGACCTTGCAGGAGTGCATGCGGAAATACCCGGACCT
CTATCCCCAGGATGATGACGATGCTGAGGAAAAGAGAAGCCGGAAGTGTTAGAGGAAGTAGCTCCCACTGAGGCTACTGC
AACCCAAGAGGAGGGGGACTCAAGT
ORF - retro_etel_2005 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 75.0 % |
| Parental protein coverage: | 88.64 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | SSAELVADDPNDPY-EEHGLILPNGDINWNCPCLGGMASGPCGEQFKSAFSCFHYSTEDV-KGSDCIDQF |
| SSAEL.A.D..DPY..EHGLILP.GDIN.NCPCL.GMASGP.GEQFKSAF.CFHYS.E.V....D..DQ. | |
| Retrocopy | SSAELEAEDLTDPY<QEHGLILPKGDINRNCPCLAGMASGPSGEQFKSAFFCFHYSPENV<RAADSADQS |
| Parental | RAMQECMQKYPDLYPQDDDDAEEE-KEKPEVLEEVAPTEAAAAQKEEGSS |
| R..QECM.KYPDLYPQDDDDA.EE.KEKPEVLEEVAPTEA.A.Q.E..SS | |
| Retrocopy | RTLQECMRKYPDLYPQDDDDA-EE<KEKPEVLEEVAPTEATATQEEGDSS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_2005 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000000065 | 2 retrocopies |
retro_etel_2005 , retro_etel_255,
|