RetrogeneDB ID: | retro_etel_197 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | GeneScaffold_3400:126594..126922(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSETEG00000001329 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | HBA | ||
| Ensembl ID: | ENSETEG00000020148 | ||
| Aliases: | None | ||
| Description: | Hemoglobin subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P24291] |
Retrocopy-Parental alignment summary:
>retro_etel_197
CTGACCAAGACCGAGAGGACCATGGTCTTGTCTATGTGGAGCAAGTTCTCCCTGCAGGTCGACAGCATGGGCACCAAGAC
CCCGGAGAGGCTCTTCACCAGCTACCCCCCAAACCAAGACCTACTTCCCACACTTCGACCTGCACCCGGGCTCGGCCCAG
CTGCGCGCGCACGGCTCCAAGGTGGTGGCTGCAGTGGGCGACGCGGTCAAGCACATAGACAACATCTCTGGGGCGCTGGC
CAAGCTGAGCGAGCTGCACACCTACATCCTGCGCGTGGACCCTGTCAACTTCAAGCTTCTGTCTCACTGCCTGCTGGTGA
CCCTGGCC
ORF - retro_etel_197 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 56.36 % |
| Parental protein coverage: | 76.76 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | LSAADKANVKAVWEKAGGNVGKYGGEALDRTFLSFPT-TKTYFPHMDLTPGSADIMAHGKKVADALTLAV |
| L.......V...W.K....V...G.....R.F.S.P..TKTYFPH.DL.PGSA...AHG.KV..A...AV | |
| Retrocopy | LTKTERTMVLSMWSKFSLQVDSMGTKTPERLFTSYPP>TKTYFPHFDLHPGSAQLRAHGSKVVAAVGDAV |
| Parental | GHMDDLPGALSKLSDLHAYKLRVDPVNFKLLSHCLLVTLA |
| .H.D...GAL.KLS.LH.Y.LRVDPVNFKLLSHCLLVTLA | |
| Retrocopy | KHIDNISGALAKLSELHTYILRVDPVNFKLLSHCLLVTLA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_197 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000020148 | 1 retrocopy |
retro_etel_197 ,
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