RetrogeneDB ID: retro_etel_1773

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_293889:112204..112444(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TMEM159
• Ensembl ID: ENSETEG00000007187
• Aliases: None
• Description: transmembrane protein 159 [Source:HGNC Symbol;Acc:30136]

Sequence

>retro_etel_1773
GCCCCTGAGTACCTCAAAGCCCTTCAGAAGCTGCCGAAGAAGTTATATTTGCTCATAGAATCCAACCAGACTAATTCAAA
GGTGATTGCCCTTTCTAAGTCTCTTGTGGGGCAATACTCAGACAGACATCTTCTCACCCTCACCTTGCTCATGTTCATTG
CCATGTCTACAATTAAAGTTGAATTCTCCCGGCTCCTGGTGCTCGTTGCATCGCTGGCTGATTTTGTGCAAGTCATAATA

Alignment

ORF - retro_etel_1773 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.26 %
• Parental protein coverage: 51.27 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AEEEPSGISKLPKMFHLLTESIQTNSKVVAFMKSPVGQYLDRHPFLTLTLLVFIAMSSIPVGFFLLVLVL
          A.E......KLPK...LL.ES.QTNSKV.A..KS.VGQY.DRH..LTLTLL.FIAMS.I.V.F..L....
Retrocopy APEYLKALQKLPKKLYLLIESNQTNSKVIALSKSLVGQYSDRH-LLTLTLLMFIAMSTIKVEFSRLLVLV

Parental  TSLAAFVGVIL
          .SLA.FV.VI.
Retrocopy ASLADFVQVII

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1773 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000007187	1 retrocopy	retro_etel_1773 ,
Sarcophilus harrisii	ENSSHAG00000005768	1 retrocopy	retro_shar_431,