RetrogeneDB ID: retro_etel_1768

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_29313:1331..1666(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000010045
• Aliases: None
• Description: None

Sequence

>retro_etel_1768
TTTAAAATCAGAACGCTAGAACTCAGTGGAAAGAAAAGGTAAACTGCAGCTATGGGGCACAGCAGGGAAAGAACTCGAAC
AATTACAAAAGCATGCTACAGAGAAGTCTTGGCACTCATGCTGGTCTCTGACTTCATGGAGGAAAAATCCTTTGACAATA
TTAAAAATTGGATAAGAAACATTGAAGAGCATGCCTCTTCAGACTTACAAGAATCATCTTGGATCACCAATGTGATATGA
ACGACAACAGACAAGAAAGAAGCGAGAAGTTAACTATTGAAAACGGGGTTAAATTCCTGGAGCTACATGCAAAATCCAAT
ACAAATGTAGAAGAG

Alignment

ORF - retro_etel_1768 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.07 %
• Parental protein coverage: 70.12 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  FKIRTIELDGKKIKLQIXXXAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV
          FKIRT.EL.G.K...........ER.RTIT.A.YR.....MLV.D...EKSFDNIKNWIRNIEEHASSD.
Retrocopy FKIRTLELSG-KKR*TAAMGHSRERTRTITKACYREVLALMLVSDFMEEKSFDNIKNWIRNIEEHASSDL

Parental  E-RMILGNKCDMNDKRQVSERGEKLAIDYGIKFLETSAKSSTNVEE
          ..R.IL...CDMND.RQ..ER.EKL.I..G.KFLE..AKS.TNVEE
Retrocopy Q<RIILDHQCDMNDNRQ--ERSEKLTIENGVKFLELHAKSNTNVEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1768 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000010045	1 retrocopy	retro_etel_1768 ,