RetrogeneDB ID: | retro_etel_1742 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_291427:8545..9530(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSETEG00000017734 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ORC4 | ||
| Ensembl ID: | ENSETEG00000000877 | ||
| Aliases: | None | ||
| Description: | origin recognition complex, subunit 4 [Source:HGNC Symbol;Acc:8490] |
Retrocopy-Parental alignment summary:
>retro_etel_1742
TTAGTAAATCATGCTTTAAGAGAACTCATGGAAATAGAAGACAGTAGTGGAAATATGTTACAAGTTCACCTAAAGGGACT
GCTGCAAATCAATGATAAAATTGCTCTACAGGAAATCACAAGGCAGTTAAGTCTGGAAAATGTAGTCGAAGATAAAGTTT
TTGGAAGCTTTGCTGAAAACCTTGTATTTCTTCCGGAAGCTTTAAGAAAAGGTAACCAGACTAGGAGTTGCACGGTGGTC
TTCATTTTAGATGAATCTGATCTTTTTGCCCATCATAAAAACCAAACACTCCTCTATAATCTTTTTGATATTTCTCAGTC
TGCACAGACTCCACTTGCAGTTATTGATCTTACATGTAGATTGGATATTTTGGAGCTCCTAGAAAAAAGAGTGAAGTCAC
AATTTTCACACCGGCAGATACACTTAATGAATTCTTTTGGTTTACCACAATATCTTAAAATATTTAAAGAACAACTATCT
CTACCTATAGAATTTCCAGACAAGCTTTTTGCTGAGAAGTGGAATGAGAATGGCCAGTGTCTCTCAGAAGATAGAAGTAT
GTGGGAAGTACTATAGAAACATTTCAACAAAAATCTATGGTCATTACATATGCTGTTGATGGTTGCTTTAAACCATGTTA
CAACATCACACCCGTTTGTACCGACAGCAGATCTGATGGAGGCAAGTCGGCTGTGTAGCAAGGACTCTAAAGCAAATATT
GTGCATGGCTTGTCAGTCTTGGAAATGTTTCTTATAATAGTAATGAAACATTTAAATAATATCTACATAGAGGAGCCCTT
TAATTTTCAAATGGTCTACAATGAGTTTCAGAAGTTTGTTCAAAGGAAGGCTCATTCCATTTATTATTTTGAGAACCCTG
TTGTCATGAAGGCTTTTGAACACTTAGAACAGCTAGAATTAGCAAAGCCCATGGAAAGAACTTCAGTAGATGCTTCTAGA
CAATACTCAAATTATGAATGTTCTA
ORF - retro_etel_1742 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 87.01 % |
| Parental protein coverage: | 75.69 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | LVNQALRELMEIEDVSGNILQVHLNGLLQINDKIALKEITRQLNLENVVEDKVFGSFAENLVFLLEALRK |
| LVN.ALRELMEIED.SGN.LQVHL.GLLQINDKIAL.EITRQL.LENVVEDKVFGSFAENLVFL.EALRK | |
| Retrocopy | LVNHALRELMEIEDSSGNMLQVHLKGLLQINDKIALQEITRQLSLENVVEDKVFGSFAENLVFLPEALRK |
| Parental | GNRTSSCPVVFILDEFDLFAHHKNQTLLYNLFDISQSAQTPLAVIGLTCRLDILELLEKRVKSRFSHRQI |
| GN.T.SC.VVFILDE.DLFAHHKNQTLLYNLFDISQSAQTPLAVI.LTCRLDILELLEKRVKS.FSHRQI | |
| Retrocopy | GNQTRSCTVVFILDESDLFAHHKNQTLLYNLFDISQSAQTPLAVIDLTCRLDILELLEKRVKSQFSHRQI |
| Parental | HLMNSFGFPQYLKIFKEQLSLPVEFPDKLFAEKWNESVQCLSEDRSIREVLQKHFNVNKNLRSLHMLLMV |
| HLMNSFG.PQYLKIFKEQLSLP.EFPDKLFAEKWNE..QCLSEDRS..EVL.KHF..NKNL.SLHMLLMV | |
| Retrocopy | HLMNSFGLPQYLKIFKEQLSLPIEFPDKLFAEKWNENGQCLSEDRSMWEVL*KHF--NKNLWSLHMLLMV |
| Parental | ALNRVTTSHPFVTTADLMEASQLCSMDSKANIVHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQK |
| ALN.VTTSHPFV.TADLMEAS.LCS.DSKANIVHGLSVLE..LII.MKHLN.IY.EEPFNFQMVYNEFQK | |
| Retrocopy | ALNHVTTSHPFVPTADLMEASRLCSKDSKANIVHGLSVLEMFLIIVMKHLNNIYIEEPFNFQMVYNEFQK |
| Parental | FVQRKAHSIYNFEKPVVMKAFEHLQQLELVKPMERTSVSAQREY-QLMRLL |
| FVQRKAHSIY.FE.PVVMKAFEHL.QLEL.KPMERTSV.A.R.Y.Q.M..L | |
| Retrocopy | FVQRKAHSIYYFENPVVMKAFEHLEQLELAKPMERTSVDASRQY>QIMNVL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1742 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000000877 | 1 retrocopy |
retro_etel_1742 ,
|
| Tursiops truncatus | ENSTTRG00000016400 | 1 retrocopy |