RetrogeneDB ID: | retro_etel_1740 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_291229:8361..8978(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ENDOV | ||
| Ensembl ID: | ENSETEG00000014048 | ||
| Aliases: | None | ||
| Description: | endonuclease V [Source:HGNC Symbol;Acc:26640] |
Retrocopy-Parental alignment summary:
>retro_etel_1740
AGGGTGGTGTATGAGGAGTGTCGCTTGGTGAACTTGAAGGCCCCATATGTGTCTGGCTTCCTGACCTTCTGAGAGGTGTC
TTTCCTGGTGCAGGCCTTGCATCGGCTGTGAGAGAAGGAGCGCAGCCTCGTGCCCCAGGTTCTTCTTGTGGTTGGAAACG
GGGTGCTCCACTATGAGGCTTTGGGGTGACCTGCTACCTCAGTGTTATCGCAGACTTGCCCTATGGCGGGTGTTCAAGAT
GCTCCTGCAGGGGACTGGCTAGAGAAATGTGACCAGCACAAGAAGATCAGATGCTGTGCACTGGCAGAGACACATTTCCC
CTGGTGGGGGCTCCAGGCCATCCTGGGAATGGCCCTGAAGAGCCATGACCACAGCATCAATCCCCCATATGTCTCTGGGG
GCACAAGATAAGCCTGGAGGCCGCAGTGTGCCTGACTCGGGCCTCCTGCAGGTTCTAGTTCCCCCTGCTAGTGCCTCAGG
CAGACATTCACTCCTGAAAGTACATTGGTGGGAGCCAGGAGCCAGGTGCTCTCCCTCTGGACTGCTCAGAGCAGGAGAGA
CCCCTGAAGGCAAAGCAGCCAGAAGTGTGCCCTCCAGGAGGTTCAGGGGAGCTCACA
ORF - retro_etel_1740 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 62.04 % |
| Parental protein coverage: | 73.85 % |
| Number of stop codons detected: | 4 |
| Number of frameshifts detected: | 4 |
Retrocopy - Parental Gene Alignment:
| Parental | KVVYEECRMVNLKAPYVSGFLAFREVPFLAEAVQRLQEKEPSLMPQASVLLVDGNGVLHQR-GFGVACHL |
| .VVYEECR.VNLKAPYVSGFL.F.EV.FL..A..RL.EKE.SL.PQ..VLLV.GNGVLH...GFGV.C.L | |
| Retrocopy | RVVYEECRLVNLKAPYVSGFLTF*EVSFLVQALHRL*EKERSLVPQ--VLLVVGNGVLHYE<GFGVTCYL |
| Parental | GILTDLLCVG-VAKKLLQVDG-LEKSDQHKEKVRCLRAAGATFPLVGDSGTILGMALKSHNRSINPLYVS |
| ....DL...G.V.K.LLQ..G.LEK.DQHK.K.RC...A...FP..G....ILGMALKSH..SINP.YVS | |
| Retrocopy | SVIADLPYGG<VFKMLLQGTG<LEKCDQHK-KIRCCALAETHFPWWGLQA-ILGMALKSHDHSINPPYVS |
| Parental | V-GHKISLETAVHLTHACCRFRIPEPVRQADIRSREYIRRNQGLPGAPALG---QERTLKAQWQEVCPPG |
| ..GHKISLE.AV.LT.A.CRF..P..V.QADI.S..YI...Q..PGA..L....QER.LKA...EVCPPG | |
| Retrocopy | G<GHKISLEAAVCLTRASCRF*FPLLVPQADIHS*KYIGGSQE-PGALPLDCSEQERPLKAKQPEVCPPG |
| Parental | GSAEPT |
| GS.E.T | |
| Retrocopy | GSGELT |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1740 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000014048 | 1 retrocopy |
retro_etel_1740 ,
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