RetrogeneDB ID: | retro_etel_1648 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_285088:35760..36156(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | DTYMK | ||
| Ensembl ID: | ENSETEG00000017215 | ||
| Aliases: | None | ||
| Description: | deoxythymidylate kinase (thymidylate kinase) [Source:HGNC Symbol;Acc:3061] |
Retrocopy-Parental alignment summary:
>retro_etel_1648
TTAATCAGGGACAAGTTGGACCAGGGCTTCACCTTCGTCGTGGACCGGTACGTCTTTTCTGGGGTCTCTTTATATCGCGC
AAAGAGAGATTTTCCCTGGGTTGTGGTGCGCGCCCACACATGTGGCCCCCCCCACCCCACATGGGGTTGTTTTTCTGCCT
GCGCAGCTCTGAGACGACGCGCGTGTGTGTGGCTTTGAAAGGAGCGATTACAAGACCGGGACTTCCAGGAACGAACTTTG
GGGTGCTTTCAGCACCTCAGGCAGGACCTGAACCTTGGTCTGGAAAAACTGTCAACGCCTCCCGGAGCATCGAGGATGTG
CACGAGGAGATCCGCACCCTGACCGAGGAGGCCATCCATGCCACTGCGCACCAGTCGCTGGGGGCGGCTCTGGGTG
ORF - retro_etel_1648 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 61.76 % |
| Parental protein coverage: | 99.24 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 5 |
Retrocopy - Parental Gene Alignment:
| Parental | LIRDKLDQGITLVVDRYAFSGVA-FTAAKESFSLDWCKQPDVGLPRPDLVLFLQLQLAEATRRGGFGQ-E |
| LIRDKLDQG.T.VVDRY.FSGV....A..E.F...WC....V.......V.FL..QL....R..GF...E | |
| Retrocopy | LIRDKLDQGFTFVVDRYVFSGVS>YIAQREIFPGLWCAPTHVXXXXXHGVVFLPAQL*DDARVCGFER<E |
| Parental | RYEDRAFQERALGCFQQLMQDPSL-VWK-TVDASRSIEDVHEEIRALTEEAIHAAAHQPLGG-LWV |
| R..DR.FQER.LGCFQ.L.QD..L.VWK.TV.ASRSIEDVHEEIR.LTEEAIHA.AHQ.LG..LWV | |
| Retrocopy | RLQDRDFQERTLGCFQHLRQDLNL>VWK>TVNASRSIEDVHEEIRTLTEEAIHATAHQSLGA>LWV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1648 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000017215 | 2 retrocopies |
retro_etel_1193, retro_etel_1648 ,
|