RetrogeneDB ID: | retro_etel_1397 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_259293:2037..2463(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSETEG00000013097 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | C12orf10 | ||
| Ensembl ID: | ENSETEG00000002112 | ||
| Aliases: | None | ||
| Description: | chromosome 12 open reading frame 10 [Source:HGNC Symbol;Acc:17590] |
Retrocopy-Parental alignment summary:
>retro_etel_1397
TCTTTCACTGAGACCACGAGCTCCCTGTCCCCTGGGAAGCCTTGGCAGACCAAGCTGAGCAGTGCGGCACTCATCTTCGG
GCACAAGCTGCTGGCCCAGTTGCGGGACACTAGTGAAGAGGACAGCATGGTGGGCACCCTCTATGACAAGATGTATGAGA
ACTTCGTGGAGGAGGTGGACGCCATGGACAATGGAATTGCCCAATGGGAGGAAGGGGAGCTTTGATATGCACTGACCACT
AGCCTGCGTGCCCGAGTGGTTCCACTGAATTTCACCTAGAACCAGCCCAACCAAGACACGGAGGCAGGGTTTCAGCGTGC
AATGGATCTGGTTTGAGAGGAGTTTCTGCAGAGACTAGAGTTCTACCAGAACAGCTGGCTACCAGCCCGGGCCCTGGTGG
AAGAGGCCCTGGCCCAGCGGTTCCAG
ORF - retro_etel_1397 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 85.52 % |
| Parental protein coverage: | 54.31 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | SFTETMSSLAPGKPWQTKLSSAGLVYLHFGHKLLAQLLGTSEEDSMVGTIYDKMYENFVEEVDAVDNGIA |
| SFTET.SSL.PGKPWQTKLSSA.L....FGHKLLAQL..TSEEDSMVGT.YDKMYENFVEEVDA.DNGIA | |
| Retrocopy | SFTETTSSLSPGKPWQTKLSSAALI---FGHKLLAQLRDTSEEDSMVGTLYDKMYENFVEEVDAMDNGIA |
| Parental | QWEEGEPRYALTTTLSARVARLNPTWNQPNQDTEAGFQRAMDLVREEFLQRLDFYQNSWLPARALVEEAL |
| QWEEGE..YALTT.L.ARV..LN.T.NQPNQDTEAGFQRAMDLV.EEFLQRL.FYQNSWLPARALVEEAL | |
| Retrocopy | QWEEGEL*YALTTSLRARVVPLNFT*NQPNQDTEAGFQRAMDLV*EEFLQRLEFYQNSWLPARALVEEAL |
| Parental | AQRFQ |
| AQRFQ | |
| Retrocopy | AQRFQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1397 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000002112 | 1 retrocopy |
retro_etel_1397 ,
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