RetrogeneDB ID: retro_etel_1369

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_255637:6829..7246(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: IMMP2L
• Ensembl ID: ENSETEG00000001410
• Aliases: None
• Description: IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) [Source:HGNC Symbol;Acc:14598]

Sequence

>retro_etel_1369
CTTTCCTGCGTGGCAAGAGTGAAAGGGGCCTCGGTGCAGCCCTCGCTGAATCCAGGCGGGAGCCAGTCATCTGAGGTGGC
GCTGCTGAACCCCTGGAAAGTGAGGAACCTGGAAGTGCAGCGTGGTGACGTCTTGTCACTGGTGTCCCCAAGAAACCCAG
GACAGAAGATCAAGAGAGTGATTGCACTTGAAGGGGACGTCGTCAGAACCATCGGTGCTAACCGCCGCTATGTCCAGATC
CCCCCGGGTCACACGTGGATCGAAGGCGATCACCACGGGCACAGTTTTGACAGTCATTCTTTCGGGCCGGTCTCCCTGGG
GCTCCTCCACGCCCACGCCACCCACATCCTGTGGCCTCCACAGCGCTGGCAGAGACTGGAGTCAGTTCTGCGCCTACTGG
TCCAGAGCGCAGAGGAG

Alignment

ORF - retro_etel_1369 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.22 %
• Parental protein coverage: 81.71 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VACVARVEGMSMQPSLNPGGSQSSDVVLLNHWKVRNFEVQRGDIVSLVSPKNPEQKIIKRVIALEGDIVK
          ..CVARV.G.S.QPSLNPGGSQSS.V.LLN.WKVRN.EVQRGD..SLVSP.NP.QKI.KRVIALEGD.V.
Retrocopy LSCVARVKGASVQPSLNPGGSQSSEVALLNPWKVRNLEVQRGDVLSLVSPRNPGQKI-KRVIALEGDVVR

Parental  TMGHKTRYVKVPPGHIWVEGDHHGHSFDSNSFGPVSLGLLHAHATHILWPPERWQKLESFLPPERLPVQS
          T.G...RYV..PPGH.W.EGDHHGHSFDS.SFGPVSLGLLHAHATHILWPP.RWQ.LES.L...RL.VQS
Retrocopy TIGANRRYVQIPPGHTWIEGDHHGHSFDSHSFGPVSLGLLHAHATHILWPPQRWQRLESVL---RLLVQS

Parental  TED
          .E.
Retrocopy AEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1369 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000001410	2 retrocopies	retro_etel_1369 , retro_etel_2063,
Tupaia belangeri	ENSTBEG00000000103	2 retrocopies	retro_tbel_2112, retro_tbel_2872,