RetrogeneDB ID: retro_etel_1355

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_252620:11935..12666(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RELL2
• Ensembl ID: ENSETEG00000017232
• Aliases: None
• Description: RELT-like 2 [Source:HGNC Symbol;Acc:26902]

Sequence

>retro_etel_1355
GCTGAAGAGGATGACATGAATGAGGATACAGTGGAGAGGATCGTTCGTTGCATCATCCAAAATGAAGTCAATGCTGAGGC
CTTGAAGGAGATGCTGGGGGGACAGTGAGGGGGAAGGGACAGTATAGCTGTCCAGTGTGGATGCCACGGCCAGCCTGCAG
GATGGTGCCCCCTCCCACCACCACACAGTGCACCTGGGCTCAGCAGCCCCTTGCATCCATTGCACCCGCAACAAGAGGCC
CCCACTGGTCCATCAGGGCTGCTCAGGAAGGAAAGAGTCTCCCTCCCGCTGGCCTGGGGAGACCACCGTGCTCTCTGTGG
GCAGGTTCCCGGTGACACACATTGAGATATGACATGGGTTTCACGAGCCCCATGGTGGCTCCCCCACAGACAGAAGCTGG
GACTTTGGTGGGGCACGGGAGCCAGGGGCAGTCAAGAGTCTGGGGGAGGGCAGCCAAGGGCAGGGGTACCTGCCATGAAG
AGACTGCTCCCGGAGAGGCCATCCCAGCCTCAGCCCCTAGCCAACCCCCCAGTGCAGAATGGAGGTCTCCAGGACCGTGG
ACAAGTCCCGTGTGCACTTGAGGGGAACCCTGGAGCCTCCACAGAGCTGGAGCTAGCGGCTGGAAGCAGGGGCTTAAGCC
CAGGGCTGCCGAGTCAAGAGGCAAATGGACAGCCAACCAAGTGGACGCCTCAGATGACCAGGTGTCCCCACCGCGGGGAA
CAGGAGGTGTG

Alignment

ORF - retro_etel_1355 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.0 %
• Parental protein coverage: 79.87 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  SEEDDMNEDTVERIVRCIIQNEANAEA-KDMLG-DSEGERTVQLSSVDATASLQDGAPSHHHTVHLGSAA
          .EEDDMNEDTVERIVRCIIQNE.NAEA.K.MLG.DSEGE.TV.LSSVDATASLQDGAPSHHHTVHLGSAA
Retrocopy AEEDDMNEDTVERIVRCIIQNEVNAEALKEMLG>DSEGEGTV*LSSVDATASLQDGAPSHHHTVHLGSAA

Parental  PCIHCTRNKRPPLVRQGRSKEGKSRPR-PGETTVFSVGRFRVTHIEKRHGFHEHHDGSPTDRSWGSGGGQ
          PCIHCTRNKRPPLV.QG.S....S..R.PGETTV.SVGRF.VTHIE..HGFHE.H.GSPTDRSW..GG..
Retrocopy PCIHCTRNKRPPLVHQGCSGRKESPSRWPGETTVLSVGRFPVTHIEI*HGFHEPHGGSPTDRSWDFGGAR

Parental  DPG-GSQESGGGQPRAGVPATERLPPERPPQPQPLANPPVQNGGLRDRGGVPCALEGNPGVSAEPGLVAG
          .PG.GSQESGGGQPRAGVPA..RL.PERP.QPQPLANPPVQNGGL.DRG.VPCALEGNPG.S.E..L.AG
Retrocopy EPG<GSQESGGGQPRAGVPAMKRLLPERPSQPQPLANPPVQNGGLQDRGQVPCALEGNPGASTELELAAG

Parental  SRGPSPGLPSQEANGQPTK-VDTSDDQVSPPRGTGGV
          SRG.SPGLPSQEANGQPTK.VD.SDDQVSPPRGTGGV
Retrocopy SRGLSPGLPSQEANGQPTK<VDASDDQVSPPRGTGGV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1355 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000017232	1 retrocopy	retro_etel_1355 ,