RetrogeneDB ID: | retro_etel_1347 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_250724:3705..4060(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSETEG00000017844 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | B9D1 | ||
| Ensembl ID: | ENSETEG00000001144 | ||
| Aliases: | None | ||
| Description: | B9 protein domain 1 [Source:HGNC Symbol;Acc:24123] |
Retrocopy-Parental alignment summary:
>retro_etel_1347
CGGATTGTGCCCAGTGTGTACGGACTGGATATATTTGGGGATGATATGGTCTGAAGCTATGGGGTAGTGCACGTGCCATT
CCCACCTGGCTGACACAAAAGGACCATCTCTATGTTTGTTACAGAATCTCCCTCTAAAGTGCTAACGTTTACAAGCTTGT
GCACAGGATTGCGGCCAGAGTACACATATCCCAAGGTGGTGGCTCCACGTGAACGCTGGGAAGTGCTGCAAGTCCACTCC
CAGGGTTCATCACCCTCCTCTTCAATGTGGTCACCAAGGGCATGAAGAAGCTGGGCTATGACACTGGCCCTGTGGACTCA
CAAGGTGTGAGTCCAATCCACCCAAAAGAATCCTC
ORF - retro_etel_1347 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 69.67 % |
| Parental protein coverage: | 58.82 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | QIVLSVYGPDLFGNDVVRGYGVVHIPFSPGRHKRTIPMFVPESTSKVQKFTSWFMGRRPEYTDPKVVAQG |
| .IV.SVYG.D.FG.D.V..YGVVH.PF.PG.HKRTI.MFV.ES.SKV..FTS...G.RPEYT.PKVVA.. | |
| Retrocopy | RIVPSVYGLDIFGDDMV*SYGVVHVPFPPG*HKRTISMFVTESPSKVLTFTSLCTGLRPEYTYPKVVAPR |
| Parental | EGREVTRVRSQ-GFITLLFNVVTKDMKKLGYDTGPVDSQGILTP-NQPQNIL |
| E..EV..V.SQ.GFITLLFNVVTK.MKKLGYDTGPVDSQG...P.N.P..IL | |
| Retrocopy | ERWEVLQVHSQ<GFITLLFNVVTKGMKKLGYDTGPVDSQGV-SP<NPPKRIL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1347 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000001144 | 3 retrocopies |
retro_etel_1347 , retro_etel_149, retro_etel_2115,
|