RetrogeneDB ID: | retro_etel_1311 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_245141:6936..7746(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | LANCL2 | ||
| Ensembl ID: | ENSETEG00000004034 | ||
| Aliases: | None | ||
| Description: | LanC lantibiotic synthetase component C-like 2 (bacterial) [Source:HGNC Symbol;Acc:6509] |
Retrocopy-Parental alignment summary:
>retro_etel_1311
CTTTTGCAGCTCCCGAGAAGCATTGGGTGTGGAGACTCAGACCTTCCTGATGAGCTGATTTATGGACGGGCAGGTTATCT
GTATGCCTTACTGTACCTGAACACAGAGATTGGCCCAGACACCATGTGTGAGTCAGCCAGTAAAGAGGGAGTCATTGCTA
TTATTGAGCCGGGGAAGAATTTGTCAAGGGCAGAGAGAAAAACGAAGCGGTGTCCTCTTTTGTGTCAATAGCACAGGAAA
CAGTATGCTGGAGCAACCTGGGGCATGGCGGGAATCCACTACATGTGAATGCAACCAGCAGCCAAAGGGGACAAGGACCT
TTGACGGAAATGGTGAAACGCAATGTCAATTATGCGCAACGCAACAAATTCCCATCTGGGAACTGCCCATCATCCTTAAG
CAGTGAGATACACAGATTGGTCCATTGGTACCATGGTGCCCCTGGTGTCTCCACGTGTTTATGCAAGCATAAAGGTATTT
AAGAGGGAGAAGTACTTGAAGGATGCCTTGGGGTGCAGTGATAGGATCTGGCAGCGAGGGTTGCTGTGGAAGGGTTATGA
CCTCTGTTATCAGTCAGCTGGAAATGGCTACTCCTTCCTGTTTCTGTACTATATCACTCAGAACAAGAAATGCCTTTACA
GATCTTGTAAGTTTGTAGAGTGGTGTCTAAATTATGGAGCACGTGGGTGTCGTATTCTTGACAGACCCAATGCTGGGTTT
GAAAGCAAGGCGGGTGCCATCCACTTCCTCTCTGATGTACTGGCACCGAAGACACCACAGTTTCCAGCTTTTGAACTTGG
CTCTTCAGAG
ORF - retro_etel_1311 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 72.63 % |
| Parental protein coverage: | 60.0 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | LLQLQRSIVCGESDLPDEMLYGRAGYLYALLYLNTEIGPGTVCESAIQEVVNAIIESGKNLSREERKTER |
| LLQL.RSI.CG.SDLPDE..YGRAGYLYALLYLNTEIGP.T.CESA..E.V.AIIE.GKNLSR.ERKT.R | |
| Retrocopy | LLQLPRSIGCGDSDLPDELIYGRAGYLYALLYLNTEIGPDTMCESASKEGVIAIIEPGKNLSRAERKTKR |
| Parental | CPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVD-QETLTEMVKPSIDYVRHKKFRSGNYPSSLSNETDR |
| CPLL.Q.HRKQY.GA..GMAGI.YM.MQPAAK.D.Q..LTEMVK....Y....KF.SGN.PSSLS.E..R | |
| Retrocopy | CPLLCQ*HRKQYAGATWGMAGIHYM*MQPAAKGD<QGPLTEMVKRNVNYAQRNKFPSGNCPSSLSSEIHR |
| Parental | LVHWCHGAPGV-IHMLMQA-YKVFKEEKYLKDAMECSDVIWQRGLLRKGYGLCHGSAGNGYSFLSLYHLT |
| LVHW.HGAPGV..H..MQA..KVFK.EKYLKDA..CSD.IWQRGLL.KGY.LC..SAGNGYSFL.LY..T | |
| Retrocopy | LVHWYHGAPGV<LHVFMQA<IKVFKREKYLKDALGCSDRIWQRGLLWKGYDLCYQSAGNGYSFLFLYYIT |
| Parental | QDKKHLYRACKFAEWCLDYGAHGCRIPDRPYSLFEGMAGAIPLLSDVLGPETSQ-PAFELGSSQ |
| Q.KK.LYR.CKF.EWCL.YGA.GCRI.DRP...FE..AGAI..LSDVL.P.T.Q.PAFELGSS. | |
| Retrocopy | QNKKCLYRSCKFVEWCLNYGARGCRILDRPNAGFESKAGAIHFLSDVLAPKTPQFPAFELGSSE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1311 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000004034 | 1 retrocopy |
retro_etel_1311 ,
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