RetrogeneDB ID: | retro_etel_1295 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_243559:8071..9074(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSETEG00000019895 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | FGG | ||
| Ensembl ID: | ENSETEG00000011686 | ||
| Aliases: | None | ||
| Description: | fibrinogen gamma chain [Source:HGNC Symbol;Acc:3694] |
Retrocopy-Parental alignment summary:
>retro_etel_1295
TTAAACCAAGTAGAAAACAAAACGTCAGAAGCTTCAGAACTGATCATAGCAATCCAAGTCAACTATAATCCCGATGAGGC
ACCAAGACCAAATACGATAGAGGGTGCTACTAAGAAGTCCAAGAGAATGTTAGAAGAAATTATGAAGTATGAGTCAATGA
TTATAACACATGAATCAACTATTCGATTTTTGCAGGAACTATATACTTCAAATAGCCAAAAGATTAGTAGCCTGAAACAG
AAGGTAGCCCAGCTTGAAGCAAAGTGTCAGGAACCTTGCAAAGATACAGTGAAAATACATGATACGACAGGGAAAGATTG
TCAAGATATTGCAAACAAAGGAGCCAAAGAAAGTGGACTTTATTTTATAAAGCCTCTGAGAGCTAAGCAGCAGTTCTTAG
TCTACTGTGAAATTGATGCATCTGGAAATGGGTGGACTGTACTTCAGAAGAGACTTGCTGGCAGAGGATTTCAAGAAAGA
TTGGATTCAGGATAAAGAAGGCTTTTGACATCTGTCTCCCACTGGCACCACGGAGTTTTGGCTGGGAAATGAGAAGATTC
ATTTGATAAGTACACAGTCTGCAATCCCATATGCATTGAGAGTGGAATTAGAAGACTGGAGTGGCAGAACCAGTACTGCA
GATTATGCCATGTTCAAGGTGGGAGCGGAAGCTGACAAGTATCGCCTGAACTATGCATACTTCATTAGTGGAGAGGCTGG
AGATGGCTTTGATGGCAATGATTTTGGTGATGATCCTAGCGACAAGTTCTTCACTTCCCACAATGGCATGCAGTTCAGTA
CCTGGGACAATGACAACAATAAGTTTGAAGGCAACTGTGCTGAACAGGGTGGCTCTGGTTGGTGGATGAACAAGTGCCAT
GGTGGCCACCTCAATGGGATTTATTACCAAGGTGGCACTTACTCCAAAGCATCGACTCCTAATGGTTATGATAATGGTAT
CATTTCGGCCACCTGGAAATCCCGGTGGTATTCCATGAAGAAA
ORF - retro_etel_1295 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 89.58 % |
| Parental protein coverage: | 91.53 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | LNEVENKTAEASELITAIQVNYNPDEPPRPNIIEGATKKSKKMLEEIMKYESMIITHESSIRFLQEIYTS |
| LN.VENKT.EASELI.AIQVNYNPDE.PRPN.IEGATKKSK.MLEEIMKYESMIITHES.IRFLQE.YTS | |
| Retrocopy | LNQVENKTSEASELIIAIQVNYNPDEAPRPNTIEGATKKSKRMLEEIMKYESMIITHESTIRFLQELYTS |
| Parental | NSQKISNLKQKVAQLETKCQEPCKDTVKIYDTTGKDCQDIANKGAKESGLYFIKPLKAKQQFLVYCEIDA |
| NSQKIS.LKQKVAQLE.KCQEPCKDTVKI.DTTGKDCQDIANKGAKESGLYFIKPL.AKQQFLVYCEIDA | |
| Retrocopy | NSQKISSLKQKVAQLEAKCQEPCKDTVKIHDTTGKDCQDIANKGAKESGLYFIKPLRAKQQFLVYCEIDA |
| Parental | SGNGWTVLQKRLDGSEDFKKR-WTQYKEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWSG |
| SGNGWTVLQKRL.G...F..R.W.Q.KEGF.HLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWSG | |
| Retrocopy | SGNGWTVLQKRLAG-RGFQER>WIQDKEGF*HLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWSG |
| Parental | RTSTADYAMFKVGPEADKYRLTYAYFISGDAGDAFDGYDFGDDPSDKFFTSHNGMQFSTWDNDNDKFEGN |
| RTSTADYAMFKVG.EADKYRL.YAYFISG.AGD.FDG.DFGDDPSDKFFTSHNGMQFSTWDNDN.KFEGN | |
| Retrocopy | RTSTADYAMFKVGAEADKYRLNYAYFISGEAGDGFDGNDFGDDPSDKFFTSHNGMQFSTWDNDNNKFEGN |
| Parental | CAEQDGSGWWMNKCHAGHLNGIYYQGGVYSTASTPNGYDNGIIWATWKPRWYSLKK |
| CAEQ.GSGWWMNKCH.GHLNGIYYQGG.YS.ASTPNGYDNGII.ATWK.RWYS.KK | |
| Retrocopy | CAEQGGSGWWMNKCHGGHLNGIYYQGGTYSKASTPNGYDNGIISATWKSRWYSMKK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1295 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000011686 | 1 retrocopy |
retro_etel_1295 ,
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