RetrogeneDB ID: | retro_etel_1254 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_235827:3044..3420(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ELSPBP1 | ||
| Ensembl ID: | ENSETEG00000008459 | ||
| Aliases: | None | ||
| Description: | epididymal sperm binding protein 1 [Source:HGNC Symbol;Acc:14417] |
Retrocopy-Parental alignment summary:
>retro_etel_1254
GATGACCCAGGCTGTCTTTTCCGTTGCACCCATCATGGAAAGACATCTACTAGCTGCATTGCAGAAGGCAGCTGGCTGGG
AAAGTTGTGGCACTCGGTAACATCCAGTGTCAATGAGAAACACCAGGTGAAATACTGTAAAGAACATGACTGTGGGGGGA
ATTCCTTCAACAAGCCCTTCCTTTTCCCCTCCAGCTCCACAAAGGGCGTCCTGACCCAGTGAGTCCACGAGGAAAGCCAC
CTGTGGTGCCCGAGCACAGAGAACACGGATGGGGGTCAGAAATGGTGCATCTGTGCAGACGCTAGAATGACCTCATTGGT
TCCTGCCCACGCCCTGTCCCCTGACCCTCCTTACTTCCCATCCCCACTATGAAAAT
ORF - retro_etel_1254 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 57.14 % |
| Parental protein coverage: | 63.13 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | DYPRCIFPFIYHGKTYTRCIAEGSWLGKLWCSVTSSFDEKHQWKYCEEHEYGGNSFSKPCIFPSIFQNDI |
| D.P.C.F....HGKT.T.CIAEGSWLGKLW.SVTSS..EKHQ.KYC.EH..GGNSF.KP..FPS...... | |
| Retrocopy | DDPGCLFRCTHHGKTSTSCIAEGSWLGKLWHSVTSSVNEKHQVKYCKEHDCGGNSFNKPFLFPSSSTKGV |
| Parental | LTKCVDDDSRLWCPTTENMDEDEQWSICADTRITSLVPG-PPCHFPFNYKNKNYFN |
| LT..V...S.LWCP.TEN.D....W.ICAD.R.TSLVP...PC..........Y.N | |
| Retrocopy | LTQ*VHEESHLWCPSTENTDGGQKWCICADARMTSLVPA>TPCPLTLLTSHPHYEN |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1254 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000008459 | 1 retrocopy |
retro_etel_1254 ,
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