RetrogeneDB ID: | retro_etel_1202 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_227013:9453..9831(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | PPP2R2C | ||
| Ensembl ID: | ENSETEG00000016038 | ||
| Aliases: | None | ||
| Description: | protein phosphatase 2, regulatory subunit B, gamma [Source:HGNC Symbol;Acc:9306] |
Retrocopy-Parental alignment summary:
>retro_etel_1202
GCTGCTCAGTTTTTATTGTCTACCAATGATGAAACAATAAAATTATGGAAAATCAATGAAAGGGACAATAGACCAGAAGT
GTATACCTTGAAAGAGGGAGATAAAAGCTATAGGGACTCTACTACCATCACTACACTAGGAGAACCGGTCTTCAGACCCT
GGATCTAATGGTTGCAGCCAGAGCAATAAGACTACCTGCCAATGCTCATCCATATCACATCAACTCTATTGCTATTAAGA
GTGGCTATGATACATATTTATCTGTGGATGATTTGAAGATTAATCTTTGGCATCTGGAAATTACCCATAGGAGTTTGAAT
ATTGTGGACATGAAGCCTTGCCAATATGGAAGAGCTCATGAAGGTGCTAACAGCAGCC
ORF - retro_etel_1202 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 58.59 % |
| Parental protein coverage: | 52.72 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | AAHALLSTNDKTIKLWKITERDKRPEGYNLKDEEGKLKALCTVTSLQVPVLKP-MDLMVEVSPRRVFANG |
| AA..LLSTND.TIKLWKI.ERD.RPE.Y.LK..........T.T.L..PV..P..DLMV.....R..AN. | |
| Retrocopy | AAQFLLSTNDETIKLWKINERDNRPEVYTLKEGDKSYRDSTTITTLGEPVFRP<LDLMVAARAIRLPANA |
| Parental | HTYHINSISVNSDCETYMSADDLRINLWHLAVTDRSFNIVDIKP-ANMEELTEVITAS |
| H.YHINSI...S...TY.S.DDL.INLWHL..T.RS.NIVD.KP.ANMEEL..V.TA. | |
| Retrocopy | HPYHINSIAIKSGYDTYLSVDDLKINLWHLEITHRSLNIVDMKP>ANMEELMKVLTAA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1202 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000016038 | 1 retrocopy |
retro_etel_1202 ,
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