RetrogeneDB ID: | retro_ecab_60 | ||
Retrocopy location | Organism: | Horse (Equus caballus) | |
| Coordinates: | 1:35835317..35835752(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSECAG00000004126 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSECAG00000009152 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_ecab_60
ATGAAACTCCTTGTGCTGGCTGTTCTGCTTACAGTGGGCGCTGGTGAGAGCGGCATCAGCCCGCGGGCAGTGTGGCAGTT
CCGCAGCATGATCCAGTGCACGATCCCCAACAGCAAACCCTATTTGGAATACAATGACTACGGCTGTTACTGTGGCCTGG
GTGGATCTGGCACTTCTGTGGATGAACTGGATGCGTGCTGCCAGGTACACGACAATTGCTACACTAAGGCCAAGGAACTG
AGCAGCTGTAGATTCCTCGTGGACAACCCCTACACTGAAAGCTACAAATTCTCATGCTCTGGCACTGAGGTCACCTGCAG
CGACAAAAACAACGCCTGTGAGGCCTTTATCTGTAACTGTGACCGAAGTGCTGCCATCTGCTTTTCAAAGGCCCCATACA
ACCTGGAGAACAAGAACCTGGACAGCAAGAGGTGT
ORF - retro_ecab_60 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 95.86 % |
| Parental protein coverage: | 98.64 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MKLLVLAVLLTVGAGENGISPRAVWQFRSMIQCTIPNSKPYLEFNDYGCYCGLGGSGTPVDELDACCQVH |
| MKLLVLAVLLTVGAGE.GISPRAVWQFRSMIQCTIPNSKPYLE.NDYGCYCGLGGSGT.VDELDACCQVH | |
| Retrocopy | MKLLVLAVLLTVGAGESGISPRAVWQFRSMIQCTIPNSKPYLEYNDYGCYCGLGGSGTSVDELDACCQVH |
| Parental | DNCYTQAKELSSCRFLVDNPYTESYKFSCSGTEVTCSDKNNACEAFICNCDRNAAICFSKAPYNPENKNL |
| DNCYT.AKELSSCRFLVDNPYTESYKFSCSGTEVTCSDKNNACEAFICNCDR.AAICFSKAPYN.ENKNL | |
| Retrocopy | DNCYTKAKELSSCRFLVDNPYTESYKFSCSGTEVTCSDKNNACEAFICNCDRSAAICFSKAPYNLENKNL |
| Parental | DSKRC |
| DSKRC | |
| Retrocopy | DSKRC |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP021940_articular_cartilage | 0 .00 RPM | 0 .00 RPM |
| SRP021940_cerebellum | 0 .00 RPM | 0 .16 RPM |
| SRP021940_embryo | 0 .03 RPM | 1 .36 RPM |
| SRP021940_placental_villous | 0 .00 RPM | 0 .05 RPM |
| SRP021940_synovial_membrane | 0 .00 RPM | 0 .00 RPM |
| SRP021940_testis | 0 .00 RPM | 22 .96 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_60 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_60 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_60 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Equus caballus | ENSECAG00000009152 | 1 retrocopy |
retro_ecab_60 ,
|