RetrogeneDB ID: retro_drer_5

Retrocopy location

• Organism: Zebrafish (Danio rerio)
• Coordinates: 19:20627596..20629114(-)
• Located in intron of: ENSDARG00000074359

Retrocopy information

• Ensembl ID: ENSDARG00000074359
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CABZ01044775.1
• Ensembl ID: ENSDARG00000086430
• Aliases: None
• Description: None

Sequence

>retro_drer_5
ATGGCTGAGTCTGCAAGAAACTATGCTAATGGAGCTACCCTGAGAACAACATCAGAAAAACATGGAACAGAACCTCCATG
TGTTACCATTGACCAGATGTTGGAGAATTTGAATGCATATTTAGACAAAAGGCTGGGACTGAGGAAGTGTCGTGATGATG
TATGCAAGAAGTACAGCATCAAGCACTCACAGAGTGGATTATGGGCATTGCCGGACATTAAAAGGGCTTATGGAAAGACA
CAGCGCTTATGCACGACCACCAAGAAGGATGGATTGTCTGTGATTTTGGTTAAGCAAATTCTTCAACATGAGCATAAGTG
TGAGACTGACAGATTGGAACGTGAGAACAAAGCGGAGAAAGCTAAAGTTCGAGCACTGGCTGAACAATTGCAAAACTTAA
AGAAGTATAAAGAAAGACTGGAAAATGAAAACAACAAGCTATTGACTTTGAGCTCCAAACAGCTGGAATCAAGATCTTTA
AGCAGCTTTGTTGACAGTGAGGCTGATCTTTCCATCAACACCTGTGTTCATGACCCAGTGAACTCAAAGATTAGATTAGC
TCCTGTGATTGTCAAACACAGAAGGACTAACGTTGAAATTGACAATGAGGAGGACTATGAAGACAATGAAGAGAGACTAA
CTCGCACTGTGACAAAATTGGTAAAGAAGTATGTTCCATACAGGACATACCATCCAGCTACTCCAGAGCAAGTTGACAAA
TGGTCAAAAGAGCTGCCAGATGTATACAAACAACCACGAAAGGTTTGGCAGTTTCTTCAACGACTGCAGAAAATCTACAT
TTTACATCCACTAGACGGTGTGATGATTCTTAATGTCACCCTAAGAGACAGTGACCAAAAGAGACTCACAGAAAGTGTTG
AAAGAAGGATTGGTGAATCACAAGAAAACATAGAGGATGGATGGGAAGCCATAAAAAACTTCTTGTTTGAACTGAAACCT
GCAGAGGTCAATTGGGCAAGAATTACCTCATGCACGCAGAAAACTGGAGAAAGTGTTGCAGAGTTTGAAGAACGCTTCAG
ACAAATATGGACGGAACATTCGGATCTGAATACAAGTGAAGATCTTGACAAAGACACTGGAATTCCCCTGAAAACAGCAT
TTGTCAACGGACTCAATCCTGAGATTTCTAAAGATCTTAAAATCAGGTATGATGACTGGGACAGCACTGTAACAACTTTC
ATCCAGATTGTTGAATGGTCAGCTAAACTGGAGAGAGCACAAGATGTCAGACTCAGATCTTTGCAATCGGAAAGTTTGTT
TTACAAGAACAGAAGAATTGAGGATGAGCAAAAAGAACGTGAGTATATGGGATACTCAAAACTACGAACTAAAGGAAGAT
GCAGAAATTGCAATGAAGAAGGACACTGGGCCCGTGAGTGCAGGCTCAGTTTAAAACGTCAAAGCAAGGATGATGACCAC
CTGTTCAAGCAGTTTCAGCAGCTAACAATACAACAAAAACAGACTCTGCTAAATGCTGTACAGCCGCAGGGAAACTAA

Alignment

ORF - retro_drer_5 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.62 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAESARNYANGATLRTTSEKHGTEPPCVTIDQMLENLNAYLDKRLGLRKCRDDVCKKYSIKHSQSGLWAL
          MAESARNYANGATLRTTSEKHGTEPPCVTIDQMLENLNAYLDKRLGLRKCRDDVCKKYSIKHSQSGLWAL
Retrocopy MAESARNYANGATLRTTSEKHGTEPPCVTIDQMLENLNAYLDKRLGLRKCRDDVCKKYSIKHSQSGLWAL

Parental  PDIKRAYGKTQRLCTTTKKDGLSVILVKQILQHEHKCETDRLERXNKAEKAKVRALAEQLQNLKKYKERL
          PDIKRAYGKTQRLCTTTKKDGLSVILVKQILQHEHKCETDRLER.NKAEKAKVRALAEQLQNLKKYKERL
Retrocopy PDIKRAYGKTQRLCTTTKKDGLSVILVKQILQHEHKCETDRLERENKAEKAKVRALAEQLQNLKKYKERL

Parental  ENENNKLLTLSSKQLESRSLSSFVDSEADLSINTCVHDPVNSKIRLAPVIVKHRRTNVEIDNEEDYEDNE
          ENENNKLLTLSSKQLESRSLSSFVDSEADLSINTCVHDPVNSKIRLAPVIVKHRRTNVEIDNEEDYEDNE
Retrocopy ENENNKLLTLSSKQLESRSLSSFVDSEADLSINTCVHDPVNSKIRLAPVIVKHRRTNVEIDNEEDYEDNE

Parental  ERLTRTVTKLVKKYVPYRTYHPATPEQVDKWSKELPDVYKQPRKVWQFLQRLQKIYILHPLDGVMILNVT
          ERLTRTVTKLVKKYVPYRTYHPATPEQVDKWSKELPDVYKQPRKVWQFLQRLQKIYILHPLDGVMILNVT
Retrocopy ERLTRTVTKLVKKYVPYRTYHPATPEQVDKWSKELPDVYKQPRKVWQFLQRLQKIYILHPLDGVMILNVT

Parental  LRDSDQRRLTESVERRIGESQENIEDGWEAIKNFLFELKPAEVNWARITSCTQKTGESVAEFEERFRQIW
          LRDSDQ.RLTESVERRIGESQENIEDGWEAIKNFLFELKPAEVNWARITSCTQKTGESVAEFEERFRQIW
Retrocopy LRDSDQKRLTESVERRIGESQENIEDGWEAIKNFLFELKPAEVNWARITSCTQKTGESVAEFEERFRQIW

Parental  TEHSDLNTSEDLDKDTGIPLKTAFVNGLNPEISKDLKIRYDDWDSTVTTFIQIVEWSTKLERAQDVRLRS
          TEHSDLNTSEDLDKDTGIPLKTAFVNGLNPEISKDLKIRYDDWDSTVTTFIQIVEWS.KLERAQDVRLRS
Retrocopy TEHSDLNTSEDLDKDTGIPLKTAFVNGLNPEISKDLKIRYDDWDSTVTTFIQIVEWSAKLERAQDVRLRS

Parental  LQSKRLFYKNRSIEDEQKESEYQRYSKLRTKGRCRNCNEEGHWARECKLSLKHQSHDDDHLFKQFQQLTI
          LQS..LFYKNR.IEDEQKE.EY..YSKLRTKGRCRNCNEEGHWAREC.LSLK.QS.DDDHLFKQFQQLTI
Retrocopy LQSESLFYKNRRIEDEQKEREYMGYSKLRTKGRCRNCNEEGHWARECRLSLKRQSKDDDHLFKQFQQLTI

Parental  QQKQTLLNAVQPQGN
          QQKQTLLNAVQPQGN
Retrocopy QQKQTLLNAVQPQGN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Danio rerio was not studied using RNA-Seq expression data.

ChIP-Seq

Danio rerio was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_drer_5 retrocopy.

TSS

Danio rerio was not studied using FANTOM5 data.

Lab

retro_drer_5 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_drer_5 has 0 orthologous retrocopies within teleost group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Danio rerio	ENSDARG00000086430	1 retrocopy	retro_drer_5 ,