RetrogeneDB ID: retro_drer_34

Retrocopy location

• Organism: Zebrafish (Danio rerio)
• Coordinates: 5:7856767..7856936(+)
• Located in intron of: ENSDARG00000042909

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CABZ01062563.1
• Ensembl ID: ENSDARG00000086035
• Aliases: None
• Description: None

Sequence

>retro_drer_34
TCTGTCCATCATTCATCTAATGCCTAATATCTGTCTGTCTGTTTGTTTTTCCATCCATCCATCCATCCTTCTGTCTATTT
ATCATTAATTTGTTGTTCTGTCCATTCATCCATCCATCCATAATTCTCTCTGTCCATCATTCATCTAATGCCTAATATCT
GTGTCTGTC

Alignment

ORF - retro_drer_34 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.33 %
• Parental protein coverage: 56.86 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SIHPSIHAILLPSVCLLFHPSIHPSIHPS-IHPSIHPFIHPSIYPSI-PHFVYCSIHPSM
          S.H.S..A..L.SVCL.FHPSIHPS...S.I.....PFIHPSI..S..P.F..C.I..S.
Retrocopy SVHHSSNA*YL-SVCLFFHPSIHPSVYLS<INLLFCPFIHPSIILSV<PSFI*CLISVSV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Danio rerio was not studied using RNA-Seq expression data.

ChIP-Seq

Danio rerio was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_drer_34 retrocopy.

TSS

Danio rerio was not studied using FANTOM5 data.

Lab

retro_drer_34 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_drer_34 has 0 orthologous retrocopies within teleost group .

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Danio rerio	ENSDARG00000086035	3 retrocopies	retro_drer_25, retro_drer_34 , retro_drer_37,
Danio rerio	ENSDARG00000090390	1 retrocopy	retro_drer_24,
Ficedula albicollis	ENSFALG00000013753	1 retrocopy	retro_falb_17,