RetrogeneDB ID: | retro_drer_30 | ||
Retrocopy location | Organism: | Zebrafish (Danio rerio) | |
| Coordinates: | 21:34864775..34865202(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | si:ch211-178j18.4 | ||
| Ensembl ID: | ENSDARG00000096024 | ||
| Aliases: | None | ||
| Description: | si:ch211-178j18.4 [Source:ZFIN;Acc:ZDB-GENE-110914-148] |
Retrocopy-Parental alignment summary:
>retro_drer_30
ATGGAGGCGGATATGGCTGAGGTCTCCCGTCGCCTCGGCCAGCGGTGCGAGTTGCCTCCCAGGACCCAGACGGATTTTCG
CAGTTTCTGCGTTGCCACTCTAATGTGGCTACACCGTCTGGGTCCTAGAAGCATCAGGGAGCGTTAGGGTGCGGGAGTGG
CTGGGCAGGCGGCCAGAGGGAGAGGCTGTAATCTTGACACTTCCCGGGAAAACCGTGAGCCTGAGCCGGAAAGAGGAGGA
GTGGCTGGAATGCTATTACAGGCACATCCGGCCGCTCTGCCTTAGGGCTCGGGCTCCGGGGGCAGAGGACAAAGGATGCT
TCTTCCTGGGAGCGTCAGGACTCCCCCTCACTAACCCCAGCCAGGAAGTCCTGCGCCTGAAAGCAAAGTACGTCAAGAGG
CAGCCCGCGCCGCCCGCTACCACCGCT
ORF - retro_drer_30 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 72.73 % |
| Parental protein coverage: | 72.45 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | MEADMAEVARRLSQRCELPPRTQMEFRSFCVATLVWLHRLGPGSVRE-LKEREWLGRRPEGDAVILTLPS |
| MEADMAEV.RRL.QRCELPPRTQ..FRSFCVATL.WLHRLGP.S.RE....REWLGRRPEG.AVILTLP. | |
| Retrocopy | MEADMAEVSRRLGQRCELPPRTQTDFRSFCVATLMWLHRLGPRSIRE>VRVREWLGRRPEGEAVILTLPG |
| Parental | EAVSLSRKEKEWLECYFRHVRPLCLKAYAAGTDDKGCFFLGASGLALTNPTADIQRLKAKQVFLSAINPS |
| ..VSLSRKE.EWLECY.RH.RPLCL.A.A.G..DKGCFFLGASGL.LTNP.....RLKAK.V......P. | |
| Retrocopy | KTVSLSRKEEEWLECYYRHIRPLCLRARAPGAEDKGCFFLGASGLPLTNPSQEVLRLKAKYVKRQPAPPA |
| Parental | LTS |
| .T. | |
| Retrocopy | TTA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Danio rerio was not studied using RNA-Seq expression data.
Danio rerio was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_drer_30 retrocopy.
Danio rerio was not studied using FANTOM5 data.
retro_drer_30 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_drer_30 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Danio rerio | ENSDARG00000096024 | 3 retrocopies |
retro_drer_27, retro_drer_29, retro_drer_30 ,
|