RetrogeneDB ID: | retro_drer_16 | ||
Retrocopy location | Organism: | Zebrafish (Danio rerio) | |
| Coordinates: | 15:30724332..30725319(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSDARG00000094080 | |
| Aliases: | or103-1, olfr13, olfr13.1, or13.1, or8, zor8 | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | or103-5 | ||
| Ensembl ID: | ENSDARG00000075128 | ||
| Aliases: | None | ||
| Description: | odorant receptor, family C, subfamily 103, member 5 [Source:ZFIN;Acc:ZDB-GENE-070806-52] |
Retrocopy-Parental alignment summary:
>retro_drer_16
ATGTCAGCCGGGAACATCAGCTTTGTTAAGGAATTTTTTATCGTTGGTTTTCCTGGGCTTCAAAAGGGATACTTTGACTC
AGTGGCTGCTCTGATGCTTTTTGTCTTTGTGTGTATCTTAGCAGGGAATGGAACATTTCTAATACTTTTTAGTCTGGAAA
AAAGCCTCCATAAACCTATGTATTATGTCATCTTAAACTTAGTTGCAAGCGATATATTATTTAGCACTACTACCCTGCCA
AAAATTATTGCTAGGTATTTGTTTCAAGATGGTAGTATTTCATTTATGGGTTGCTTCATTCAAATGTATTTTGTGCATTA
TTTTGGTACAGTCAATGCTTTTATCCTGGCAATAATGGCCTTTGATAGGTATGTAGCCATTTGTAATCCCTTAAGATATC
CCAATATAGTCACAAAGTGGAACATTTTCTATCTTTGTCTCATTTCATGGGTTATAGCAAATGTAACCCCTTTAATGATG
GTAATAAGAGCTTACCCTCTCCCATACTGCGCAGAAAACACCATTATACAATGTTACTGTGATCACATTTCTATAACATC
GCTTGCATGCACCAATCGTGCACCATATAGTATTCCAGCTTTTGTTCTTGCTATGGTTGCGTTGCTTACTCCCCTGGCCT
TTATAGTTTTCTCTTATTGTGCCATCATTTTGGCAGTTCTGCGTATATCAAGCACTCAAGCAAGACTGAAGACTTTCTCC
ACCTGCAGTCCTCAGCTCATCATAATTGCTCTCTATTTTCTACCCAGGTGTTTTATTTATTTATCAAGCAATATCGGCAT
CTACTTCAGCACTGATTTGCGATTAGCCATTATTATGATGTATAGTCTGTTTCCACCCATGTTCAACCCTCTCATTTATT
GCTTAAGGACAAAAGATGTAAAGGAATGCTTAGTTAAAAGACTTAAAATCTCAACGAATGTCAAGTTTAATCTAACAAAA
GTTGACATATCCTCAGTATCTTCATAA
ORF - retro_drer_16 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 72.76 % |
| Parental protein coverage: | 90.55 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LFIYTFMAI-SGNGTFLILFSLEKSLHKPMYYVILNLVASDILFSTTTLPKIIARYLFQDGSISFMGCFI |
| L....F..I..GNGTFLILFSLEKSLHKPMYYVILNLVASDILFSTTTLPKIIARYLFQDGSISFMGCFI | |
| Retrocopy | LMLFVFVCILAGNGTFLILFSLEKSLHKPMYYVILNLVASDILFSTTTLPKIIARYLFQDGSISFMGCFI |
| Parental | QMYFVHYFGTVNAFILAIMAFDRYVAICNPLRYPNIVTKWNIFYLCLISWAFVLAMVALLTPLRGRMNFC |
| QMYFVHYFGTVNAFILAIMAFDRYVAICNPLRYPNIVTKWNIFYLCLISW...................C | |
| Retrocopy | QMYFVHYFGTVNAFILAIMAFDRYVAICNPLRYPNIVTKWNIFYLCLISWVIANVTPLMMVIRAYPLPYC |
| Parental | SNNSIIHCYCDHVSITTLACTDRSLYSIPALIYAFLILLVPFAVIIFSYCSIFIAVMRISGSQGRMKTFS |
| ..N.II.CYCDH.SIT.LACT.R..YSIPA...A...LL.P.A.I.FSYC.I..AV.RIS..Q.R.KTFS | |
| Retrocopy | AENTIIQCYCDHISITSLACTNRAPYSIPAFVLAMVALLTPLAFIVFSYCAIILAVLRISSTQARLKTFS |
| Parental | TCSPQLIIIALYFIPRILNFLSSNIGLKFSTDLRLIMIMMYSVLPPLINPIIYCLRTEEVKKVLRQQFK |
| TCSPQLIIIALYF.PR....LSSNIG..FSTDLRL..IMMYS..PP..NP.IYCLRT..VK..L....K | |
| Retrocopy | TCSPQLIIIALYFLPRCFIYLSSNIGIYFSTDLRLAIIMMYSLFPPMFNPLIYCLRTKDVKECLVKRLK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Danio rerio was not studied using RNA-Seq expression data.
Danio rerio was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_drer_16 retrocopy.
Danio rerio was not studied using FANTOM5 data.
retro_drer_16 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_drer_16 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Danio rerio | ENSDARG00000075128 | 1 retrocopy |
retro_drer_16 ,
|