RetrogeneDB ID: | retro_dord_661 | ||
Retrocopy location | Organism: | Kangaroo rat (Dipodomys ordii) | |
| Coordinates: | scaffold_4955:7311..8289(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | Pias3 | ||
| Ensembl ID: | ENSDORG00000013427 | ||
| Aliases: | None | ||
| Description: | protein inhibitor of activated STAT 3 [Source:MGI Symbol;Acc:MGI:1913126] |
Retrocopy-Parental alignment summary:
>retro_dord_661
GTTACCCCTCACTCACCACCATCTCCTGTTGGTTCTGTGCTGCAGCAACCATCTCTTCCACTTCCTCCTGACCATCCTGA
GGTGCAGCTCACAAACTTGCCCTTTTATGATATCCTTAAGGTTCTCATCAAACCCACCAGTTTAGTTAAAAGCAGCATTC
CGCCATTTCAAGAGAACTTCTTTAGTTTTGCTCTGACACCTCAAGAAGTTAGAAAGATCCGCATATCAAAACACTCTTTG
CCAGGTGGCAGAATAAATTATGGAGTCCAAGTGCAGCTGAGACTTTGCCTGGTAGAGACAAGTTGCCCTCAAGAAGATAA
CTACCCCAACAGACTATGTATAAAAGTAAACGGATGGCTGTTTCCTTTGCCTGGCTCTGCATCCTCACCTAAAAGTGGGA
TTGAACAGAAGTGCCCTGGGCGCCCGTTGAATATTACATCTTTAGTTAGATTGTCTTCGGCTGTGCCCAATCGGATTTCT
ATTTCTTGGGCATCTGAAATTGGGAAGAATCACTCCATGTCTGTATATCTTGTAGAAAAGCTCACCTCAGCCACGTTACT
ACAGAGATTAAACTGTACTGTTAGTAATCCAGACCAATCCAGAGCACTAATTAAAGAAAAACTTACTGCGGATCCTGATA
GTGAAGTTGCTGTGACTAGTCTTCAGGTATCGCTGGTGTGCCCTTTAGGAAAAATGAGGCTGACAGCCCCATGCCGTGCA
GTGACATGTACACACCTGCAGTGTTTTGATGCTGCCGTCTACCTACAAATGAATGAGAAGAAACTCACCTGGATTTGTCC
TGTGTGTGACCAAAAAGCTGCCTACGAAAATCTGATATTAGATGGGCTTTTTATGGAAATTCTCAGTGCCTGTTCAGAGG
TGGATGAGATTGAATTCCAAAAAGATGGCGTTTGGTGTCCAGTGAGGCTGAAGAAAGAAGCTATGCAGGTTCCCAGTCCA
CCACATGCAAACTTAGAA
ORF - retro_dord_661 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 59.33 % |
| Parental protein coverage: | 52.76 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LTPGTLLGPKREVDLHPPLPQPV-HPDVTMKPLPFYEVYGELIRPTTLASTSSQRFEEAHFTFALTPQQV |
| .TP.....P...V...P.LP.P..HP.V....LPFY.....LI.PT.L...S...F.E..F.FALTPQ.V | |
| Retrocopy | VTPHSPPSPVGSVLQQPSLPLPPDHPEVQLTNLPFYDILKVLIKPTSLVKSSIPPFQENFFSFALTPQEV |
| Parental | QQILTSREVLPGAKCDYTIQVQLRFCLCETSCPQEDYFPPNLFVKVNGKLCPLPGYLPPTKNGAEPKRPS |
| ..I..S...LPG....Y..QVQLR.CL.ETSCPQED..P..L..KVNG.L.PLPG.....K.G.E.K.P. | |
| Retrocopy | RKIRISKHSLPGGRINYGVQVQLRLCLVETSCPQEDNYPNRLCIKVNGWLFPLPGSASSPKSGIEQKCPG |
| Parental | RPINITALARLSATVPNTIVVNWSSEFGRNYSLSVYLVRQLTAGTLLQKLRAKGIRNPDHSRALIKEKLT |
| RP.NIT.L.RLS..VPN.I...W.SE.G.N.S.SVYLV..LT..TLLQ.L......NPD.SRALIKEKLT | |
| Retrocopy | RPLNITSLVRLSSAVPNRISISWASEIGKNHSMSVYLVEKLTSATLLQRLNCT-VSNPDQSRALIKEKLT |
| Parental | ADPDSEVATTSLRVSLMCPLG-MRLTVPCRALTCAHLQSFDAALYLQMNEKKPTWTCPVCDKKAPYESLI |
| ADPDSEVA.TSL.VSL.CPLG.MRLT.PCRA.TC.HLQ.FDAA.YLQMNEKK.TW.CPVCD.KA.YE.LI | |
| Retrocopy | ADPDSEVAVTSLQVSLVCPLGKMRLTAPCRAVTCTHLQCFDAAVYLQMNEKKLTWICPVCDQKAAYENLI |
| Parental | IDGLFMEILNSCSDCEEIQFMEDGSWCPMKPKKEASEVCPPPGYGLD |
| .DGLFMEIL..CS...EI.F..DG.WCP...KKEA..V..PP...L. | |
| Retrocopy | LDGLFMEILSACSEVDEIEFQKDGVWCPVRLKKEAMQVPSPPHANLE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Dipodomys ordii was not studied using RNA-Seq expression data.
Dipodomys ordii was not studied using ChIP-Seq data.
Dipodomys ordii was not studied using EST data.
Dipodomys ordii was not studied using FANTOM5 data.
retro_dord_661 was not experimentally validated.
Retrocopy orthology:
Dipodomys ordii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Dipodomys ordii | ENSDORG00000013427 | 1 retrocopy |
retro_dord_661 ,
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