RetrogeneDB ID: | retro_dord_557 | ||
Retrocopy location | Organism: | Kangaroo rat (Dipodomys ordii) | |
| Coordinates: | scaffold_3219:21596..21875(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSDORG00000016176 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_dord_557
ACCAGCTGTGGTATTGGAGGTGGCATCAGCTGTGGCCAGGAGGGAGGCTCTGGAGCCATGAGCTGCCGCGTCAGATGGTG
CCGCCCAGACTGCCGCGTGGAGGGCACCTGCCTGCCACCCTGCTGCGTGGTGAGCTCCACACCCCCCACCTGCTGCCAGC
TGCACCATGCCCAGGCCTCCTGCTGCCGCCCATCCTACTGTGGACAGTCCTGCTGCCGCCCAGCCTGCTGCTGCCACTGC
TGTCAGCCCTCCTGCTGTGAGCCCACATGTTAAAAGCCA
ORF - retro_dord_557 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 77.32 % |
| Parental protein coverage: | 71.85 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | TGCGVGGGIGCGQTGGSGSLSCRTRWCRPDCSVEGTSLPPCCVVSCTPPTCCQLHHAQASCCRPSYCGQS |
| T.CG.GGGI.CGQ.GGSG..SCR.RWCRPDC.VEGT.LPPCCVVS.TPPTCCQLHHAQASCCRPSYCGQS | |
| Retrocopy | TSCGIGGGISCGQEGGSGAMSCRVRWCRPDCRVEGTCLPPCCVVSSTPPTCCQLHHAQASCCRPSYCGQS |
| Parental | CCRPACCKPSCSCSEPPSCCQSSCCQP |
| CCRPACC...C.C...PSCC...C..P | |
| Retrocopy | CCRPACC---CHCCQ-PSCCEPTC*KP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Dipodomys ordii was not studied using RNA-Seq expression data.
Dipodomys ordii was not studied using ChIP-Seq data.
Dipodomys ordii was not studied using EST data.
Dipodomys ordii was not studied using FANTOM5 data.
retro_dord_557 was not experimentally validated.
Retrocopy orthology:
Dipodomys ordii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Dipodomys ordii | ENSDORG00000016176 | 1 retrocopy |
retro_dord_557 ,
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