RetrogeneDB ID: | retro_dord_519 | ||
Retrocopy location | Organism: | Kangaroo rat (Dipodomys ordii) | |
| Coordinates: | scaffold_25872:6774..7047(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | Apitd1 | ||
| Ensembl ID: | ENSDORG00000006387 | ||
| Aliases: | None | ||
| Description: | apoptosis-inducing, TAF9-like domain 1 [Source:MGI Symbol;Acc:MGI:1917178] |
Retrocopy-Parental alignment summary:
>retro_dord_519
GAGGAGGGAGAGGAAGCCAAGGAGCAACAGTGATTCTCTTACCAGCACAGGCTAAAGGCTGTAGTTCACTATACAGTTGG
TTGCCTTTGCAAAGAAGTTGAATTGGACAAAGAGATGCCGTTTGGCAAACAGACCATTGCAACAATCTTGGATCTGACTT
TTCAGCAATGCAATAATTTTGCCAAAGACCTTGAGATGTTTGTCAGACACGCGAAAAGAAGCACAATTAACACTGATGAC
ATGAATCTCTTAGTGAGAAGAACCAGAAGATTG
ORF - retro_dord_519 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 81.32 % |
| Parental protein coverage: | 54.82 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | EEGEEAEEQQRFSYQQRLKAAVHYTVGCLCKEVELDKEMPFSKQTIAAISELTFRQCDNFAKDLEMFARH |
| EEGEEA.EQQ.FSYQ.RLKA.VHYTVGCLCKEVELDKEMPF.KQTIA.I..LTF.QC.NFAKDLEMF.RH | |
| Retrocopy | EEGEEAKEQQ*FSYQHRLKAVVHYTVGCLCKEVELDKEMPFGKQTIATILDLTFQQCNNFAKDLEMFVRH |
| Parental | AKRSTINTDDVKLLARRSNSL |
| AKRSTINTDD..LL.RR...L | |
| Retrocopy | AKRSTINTDDMNLLVRRTRRL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Dipodomys ordii was not studied using RNA-Seq expression data.
Dipodomys ordii was not studied using ChIP-Seq data.
Dipodomys ordii was not studied using EST data.
Dipodomys ordii was not studied using FANTOM5 data.
retro_dord_519 was not experimentally validated.
Retrocopy orthology:
Dipodomys ordii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000004967 | 1 retrocopy | |
| Dipodomys ordii | ENSDORG00000006387 | 1 retrocopy |
retro_dord_519 ,
|
| Macropus eugenii | ENSMEUG00000004963 | 1 retrocopy |