RetrogeneDB ID: | retro_dmel_43 | ||
Retrocopy location | Organism: | Fruit fly (Drosophila melanogaster) | |
| Coordinates: | 3R:5946244..5947096(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | FBgn0037789 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | gammaSnap | ||
| Ensembl ID: | FBgn0028552 | ||
| Aliases: | None | ||
| Description: | gamma-soluble NSF attachment protein [Source:FlyBase gene name;Acc:FBgn0028552] |
Retrocopy-Parental alignment summary:
>retro_dmel_43
ATGAGCACTCTTGATGCCAAAAAGATAGAAGAGGCGGAGGCCTTGATAGGACAGACGGATAGTGCCGCGAATGAGTATGC
CAAAGCTGGTATGTATTTCAAGGCAGCAACCGCATATCGAATTGCCAAAAGTTTCGATAAGCGCAAGGATTGTCTTTTGA
AGGCCATCGACTGTTACGAAAACAACAAGTCATGGTTCCATGCAGCCAAATCCTACGAGCAGATTATCCTGCTTGCCAAA
GAAACGGACAAACTGTCCGAAGTGGAGGACTATGCCAATAGGGCTTGCTGTCTCTACCAGCAACATGGTTCGCCGGAAGC
AGCAGCTGCTGCTCTCGATAAAGCCGCCAAAATGACGGAATCCAAGCATCCTGACTTGGCTTTGGGATTTTACAAACGCG
CCCTGGCAGTCGTCTTGATTGGGGACTCCACTCATCAGGCATCGGAATTTGCATCGAAGGTTTCCCGGATATTGGTCAGA
CTCAAAAAATATGAAGAAGCCACGAAAGCCCTCAAAAAGGAAATAAGCCTAAATCTGCAGACAAAGTCTTACGGACAAGT
TGGCCGTTTAGTAGTTGCTTTAATACTGGTACAATTAACACTAGAGGATTACGTGGATGCCAAGAAGACCTTCAAGAAAT
GGGGAAACCGTTGTGATCCCCAGGAGGTGAACACATTACAAAACCTACTCAAAGCTTTTGACGACGAGGATCCTGAGCTG
GCCACCAAGATGCTGGCATCTCCATTCATAAGACACATGGACGTGGAGTACGCACTTTTATCTAAAGATGTGCCATTACC
AAAAGGAAATCGTCAAATGACCAAAAATGCAGTCGACAATGCCGCAAACTAA
ORF - retro_dmel_43 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 72.83 % |
| Parental protein coverage: | 83.77 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | ADEYSKAATAYRIAKSYDKSKECFLKAIDAYKNNKSWFHAAKAYEQIILLSKDADKLHEVEEYANKSASL |
| A..Y.KAATAYRIAKS.DK.K.C.LKAID.Y.NNKSWFHAAK.YEQIILL.K..DKL.EVE.YAN....L | |
| Retrocopy | AGMYFKAATAYRIAKSFDKRKDCLLKAIDCYENNKSWFHAAKSYEQIILLAKETDKLSEVEDYANRACCL |
| Parental | YQQHGSPEAAASALDKAAKLTESKHPDMALRFYQHALEVIMIEDSVRQAAEYASKVSRILVKLRRYDEAT |
| YQQHGSPEAAA.ALDKAAK.TESKHPD.AL.FY..AL.V..I.DS..QA.E.ASKVSRILV.L..Y.EAT | |
| Retrocopy | YQQHGSPEAAAAALDKAAKMTESKHPDLALGFYKRALAVVLIGDSTHQASEFASKVSRILVRLKKYEEAT |
| Parental | NALKKEISLNQQTESYGQIGRLVVALVMVQLARGDSVEAEKTFREWGNCCEPEEVSTLQTLLQAFDDEDP |
| .ALKKEISLN.QT.SYGQ.GRLVVAL..VQL...D.V.A.KTF..WGN.C.P.EV.TLQ.LL.AFDDEDP | |
| Retrocopy | KALKKEISLNLQTKSYGQVGRLVVALILVQLTLEDYVDAKKTFKKWGNRCDPQEVNTLQNLLKAFDDEDP |
| Parental | ELAARMLASPFIRHMDVEYAILSKNIPLPQG-IQMEKKAGDTAA |
| ELA..MLASPFIRHMDVEYA.LSK..PLP.G..QM.K.A.D.AA | |
| Retrocopy | ELATKMLASPFIRHMDVEYALLSKDVPLPKGNRQMTKNAVDNAA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_dmel_43 retrocopy.
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_43 was not experimentally validated.
Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Drosophila melanogaster | FBgn0028552 | 1 retrocopy |
retro_dmel_43 ,
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