RetrogeneDB ID: | retro_dmel_41 | ||
Retrocopy location | Organism: | Fruit fly (Drosophila melanogaster) | |
| Coordinates: | 3L:17542936..17543749(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | FBgn0036738 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | CG10472 | ||
| Ensembl ID: | FBgn0035670 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_dmel_41
ATGATGAAACTTTTGGTTTGCGTCCTGCTGGTAGGATCCTGTACGGCTGTTCCCCTCCTTACCGATGTGGAACCCTATAT
TACGAATGGAGAACCGGCGGAGGTGGGTCAGTTTCCCTACCAGGCCGGTCTGAACGTCTCCTTCGGGAACTGGAGCACTT
GGTGCGGCGGCACCTTGATCTCACACTACTGGATAATCACAGCAGCACACTGCATGGATGGGGCGGAGTCCGTAACGGTC
TATTTGGGGGCCATAAACATCGGTGATGAGTCCGAGGAGGGTCAAGAAAGGATCATGGTGGAGAAGTCGGGTATTATAGT
GCACTCGAACTATATGGCCAGCACGGTGGTCAACGACATCTCGCTTATTCGATTGCCCGCCTTTGTGGGTTTCACTGATC
GCATCCGGGCCGCCAGTTTGCCCCGTCGCTTGAATGGCCAGTTTCCCACGTACGAGTCCATCCGGGCCTTCGCCTCCGGC
TGGGGGCGGGAAAGCGATGCCTCCGACTCGGTTTCCCCCGTGCTGAGATACGTGGAGATGCCCATTATGCCTCACTCCCT
GTGCCGGATGTACTGGAGTGGAGCTGTGTCGGAGAAGATGATCTGCATGAGCACCACCAGCGGCAAGTCCACCTGCCATG
GTGACTCTGGCGGTCCGCTGGTCTACAAGCAGGGCAACTCCAGCTACCTGATCGGATCCACCTCTTTTGGAACCTCTATG
GGATGTCAAGTGGGATTCCCGGCCGTGTTCACCCGCATCAGCAGCTACTTGGACTGGATCCTTAACCATATCATCGCCCA
TAATAAAGAATAA
ORF - retro_dmel_41 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 50.21 % |
| Parental protein coverage: | 80.34 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | ITGGQIAEPNQFPYQVGLLLYITGGAAWCGGTIISDRWIITAAHCTDSLTTGVDVYLGAHDRTNAKEEGQ |
| IT.G..AE..QFPYQ.GL.........WCGGT.IS..WIITAAHC.D.....V.VYLGA.......EEGQ | |
| Retrocopy | ITNGEPAEVGQFPYQAGLNVSFGNWSTWCGGTLISHYWIITAAHCMDG-AESVTVYLGAINIGDESEEGQ |
| Parental | QIIFVETKNVIVHEDWIAETITNDISLIKLPVPIEFNKYIQPAKLPVK-SDSYSTYGGENAIASGWGKIS |
| ..I.VE....IVH....A.T..NDISLI.LP....F...I..A.LP........TY....A.ASGWG..S | |
| Retrocopy | ERIMVEKSGIIVHSNYMASTVVNDISLIRLPAFVGFTDRIRAASLPRRLNGQFPTYESIRAFASGWGRES |
| Parental | DSATGATDILQYATVPIMNNSGCSPWYFGLVAASNICIKTTGGISTCNGDSGGPLVLDDG-SNTLIGATS |
| D........L.Y...PIM..S.C.....G.V....IC..TT.G.STC.GDSGGPLV...G.S..LIG.TS | |
| Retrocopy | DASDSVSPVLRYVEMPIMPHSLCRMYWSGAVSEKMICMSTTSGKSTCHGDSGGPLVYKQGNSSYLIGSTS |
| Parental | FGIALGCEVGWPGVFTRITYYLDWI |
| FG...GC.VG.P.VFTRI..YLDWI | |
| Retrocopy | FGTSMGCQVGFPAVFTRISSYLDWI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
1 EST(s) were mapped to retro_dmel_41 retrocopy
| EST ID | Start | End | Identity | Match | Mis-match | Score |
|---|---|---|---|---|---|---|
| EV586359 | 17543353 | 17543466 | 100 | 113 | 0 | 113 |
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_41 was not experimentally validated.
Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Drosophila melanogaster | FBgn0035670 | 1 retrocopy |
retro_dmel_41 ,
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