RetrogeneDB ID:

retro_dmel_39

Retrocopy
location
Organism:Fruit fly (Drosophila melanogaster)
Coordinates:2L:17591697..17592111(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:FBgn0032652
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:CG3566
Ensembl ID:FBgn0029854
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_dmel_39
ATGTCATCCGCGTTGACGAACCTCTTGCAATCGCTGAGAATTGTGCCCTTGGGACATGGAAAGTCCAGTAATCAGGTGGT
CGTTGTACCAAGCAAAAAGGAACGTTTAAAACTGGAAGATCTGCCGGAGATCGCATTGGAGGAGGTGGCCCAGCACGACA
GCTTCGACGATTGCTGGGTGGTAATCTACGATAGGGTCTACGATGTGACACACTTTCTAAGGGATCATCCCGGCGGCGAC
GACGTCATTATGGATCACGCAGGGCGAGATGCCACCATCGCCTTCCATGGCACAGGACACTCGGGGGATGCCATCGAAAT
GATGAAGGATTTCTTGATCGGTCAACTGCCCACCAAGCAGCACATTTTTCGCACTGGCAAAAACAAGGTTTTGTCCCTGG
GCATACCGGAATAA

ORF - retro_dmel_39 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 52.7 %
Parental protein coverage: 83.15 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalEIRLATVNEHNKATDLWVVIDNKVYDVTKFRLEHPGGEESLVDEAGRDATKAFNDVGHSSEAREMLKKYY
EI.L..V..H....D.WVVI...VYDVT.F...HPGG.....D.AGRDAT.AF...GHS..A.EM.K...
RetrocopyEIALEEVAQHDSFDDCWVVIYDRVYDVTHFLRDHPGGDDVIMDHAGRDATIAFHGTGHSGDAIEMMKDFL
ParentalIGDL
IG.L
RetrocopyIGQL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Drosophila melanogaster was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_dmel_39 retrocopy.

TSS - click to see more details

Drosophila melanogaster was not studied using FANTOM5 data.

Lab - click to see more details

retro_dmel_39 was not experimentally validated.

Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 47 parental genes, and 80 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000136142 retrocopies
retro_amel_1727, retro_amel_860,
Anas platyrhynchos ENSAPLG000000075181 retrocopy
retro_apla_13,
Canis familiaris ENSCAFG000000000262 retrocopies
retro_cfam_32, retro_cfam_787,
Choloepus hoffmanni ENSCHOG000000003592 retrocopies
retro_chof_128, retro_chof_239,
Callithrix jacchus ENSCJAG000000031633 retrocopies
retro_cjac_2427, retro_cjac_2602, retro_cjac_686,
Cavia porcellus ENSCPOG000000121111 retrocopy
retro_cpor_1140,
Cavia porcellus ENSCPOG000000142341 retrocopy
retro_cpor_1117,
Dasypus novemcinctus ENSDNOG000000083139 retrocopies
retro_dnov_1424, retro_dnov_2077, retro_dnov_2123, retro_dnov_2310, retro_dnov_2684, retro_dnov_2685, retro_dnov_706, retro_dnov_716, retro_dnov_728,
Equus caballus ENSECAG000000175811 retrocopy
retro_ecab_12,
Erinaceus europaeus ENSEEUG000000106831 retrocopy
retro_eeur_587,
Echinops telfairi ENSETEG000000006911 retrocopy
retro_etel_381,
Felis catus ENSFCAG000000245411 retrocopy
retro_fcat_1816,
Homo sapiens ENSG000001030181 retrocopy
retro_hsap_1493,
Homo sapiens ENSG000001663473 retrocopies
retro_hsap_1307, retro_hsap_1373, retro_hsap_2462,
Gallus gallus ENSGALG000000006601 retrocopy
retro_ggal_13,
Gorilla gorilla ENSGGOG000000079681 retrocopy
retro_ggor_1068,
Gorilla gorilla ENSGGOG000000150311 retrocopy
retro_ggor_1146,
Loxodonta africana ENSLAFG000000100201 retrocopy
retro_lafr_414,
Macropus eugenii ENSMEUG000000158991 retrocopy
retro_meug_1573,
Meleagris gallopavo ENSMGAG000000086191 retrocopy
retro_mgal_12,
Myotis lucifugus ENSMLUG000000066081 retrocopy
retro_mluc_1734,
Myotis lucifugus ENSMLUG000000114625 retrocopies
retro_mluc_1159, retro_mluc_1333, retro_mluc_1475, retro_mluc_1701, retro_mluc_1908,
Macaca mulatta ENSMMUG000000120391 retrocopy
retro_mmul_128,
Macaca mulatta ENSMMUG000000136073 retrocopies
retro_mmul_2162, retro_mmul_2199, retro_mmul_546,
Mustela putorius furoENSMPUG000000166301 retrocopy
retro_mputfur_776,
Mus musculus ENSMUSG000000246461 retrocopy
retro_mmus_2177,
Mus musculus ENSMUSG000000319241 retrocopy
retro_mmus_2289,
Nomascus leucogenys ENSNLEG000000055151 retrocopy
retro_nleu_1715,
Nomascus leucogenys ENSNLEG000000092321 retrocopy
retro_nleu_1066,
Oryctolagus cuniculus ENSOCUG000000077292 retrocopies
retro_ocun_141, retro_ocun_255,
Otolemur garnettii ENSOGAG000000000524 retrocopies
retro_ogar_1248, retro_ogar_1888, retro_ogar_2041, retro_ogar_2869,
Ochotona princeps ENSOPRG000000115843 retrocopies
retro_opri_1091, retro_opri_296, retro_opri_405,
Pongo abelii ENSPPYG000000075061 retrocopy
retro_pabe_1243,
Pongo abelii ENSPPYG000000092402 retrocopies
retro_pabe_1094, retro_pabe_1140,
Pan troglodytes ENSPTRG000000082821 retrocopy
retro_ptro_1012,
Pan troglodytes ENSPTRG000000101113 retrocopies
retro_ptro_1421, retro_ptro_898, retro_ptro_943,
Pteropus vampyrus ENSPVAG000000159841 retrocopy
retro_pvam_977,
Rattus norvegicus ENSRNOG000000152052 retrocopies
retro_rnor_1565, retro_rnor_2455,
Sarcophilus harrisii ENSSHAG000000142001 retrocopy
retro_shar_688,
Ictidomys tridecemlineatus ENSSTOG000000113161 retrocopy
retro_itri_1296,
Ictidomys tridecemlineatus ENSSTOG000000224361 retrocopy
retro_itri_1617,
Tupaia belangeri ENSTBEG000000149983 retrocopies
retro_tbel_3229, retro_tbel_3338, retro_tbel_4600,
Tarsius syrichta ENSTSYG000000022411 retrocopy
retro_tsyr_1033,
Tarsius syrichta ENSTSYG000000142921 retrocopy
retro_tsyr_2171,
Tursiops truncatus ENSTTRG000000100161 retrocopy
retro_ttru_521,
Tursiops truncatus ENSTTRG000000152721 retrocopy
retro_ttru_1588,
Drosophila melanogaster FBgn0029854 1 retrocopy
retro_dmel_39 ,


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