RetrogeneDB ID: | retro_dmel_29 | ||
Retrocopy location | Organism: | Fruit fly (Drosophila melanogaster) | |
| Coordinates: | X:4678230..4679670(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | FBgn0029727 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | Picot | ||
| Ensembl ID: | FBgn0024315 | ||
| Aliases: | None | ||
| Description: | Picot [Source:FlyBase gene name;Acc:FBgn0024315] |
Retrocopy-Parental alignment summary:
>retro_dmel_29
ATGACCGACACCGCTGGAGTGTACGACTCCAAAGGGGTCAGTAATCGGAATCGCAGTGATCAGGAGGTCAGGATGGAGCG
CTACGCCTCCGATGGGCAAATTCCCAGGTGCCGAAAGACCCGATTCTTCGTCGTCCTGATGCTCTTCTCGGGAATGGCCA
ATGCCTATGTGATGCGCACAAATATGTCTGTGGCGATTGTTGCCATGGTCAACCACACGGCAATCTCGCATACCAAGTCG
TCGACTCAATCGAAGGAACGGGATGGTGACTTCGAGTGGAGTTATAAGCTGCAGGGCTACATCCTTTCTAGCTTCTTCTA
TGGCTATGTGATAACCCAAATACCCTTTGGCCTGATGATCAAATACTACGGTGCTCGGCATTTTCTCGGCTGGGGCATGA
TGATCAACTCGTTGGCCGCCTTCTTTATTCCGATCTCGGCAAGATCGGGTGGCGTCGTCGGTCTGTGTGTGGTGCGTTTC
ATCCAGGGCCTGGGCGAGGGACCCATTGTGCCCTGCTCCCACTCTTTGCTGGCCCAGTGGGTTCCCCCGAACGAGAGATC
ACTGGCCGGAGCAGCGGTCTACGCAGGTGCCCAGTTTGGTACCATAGTATCTATGCCATTGAGTGGACTTCTGGCTCACT
ACGGTTTCGATGGCGGCTGGCCATCGATCTTCTATATCTTCGGGCTGTTCAGCACCATCTGGTGTATCATCTTTATTTGC
CTGGTGCAGGAGAGTCCGGCCGTGAGTACTCGCATCTCGGAGGCGGAGAGGCGACACATCATGGAGGCCATTTGGCAGGC
ACAGCCGGAGGAAAGGAGCCGGATACCCTTTCTGGGCATTGCCAAATCGCCACCCTTTTATGCCATACTGGTGGCCCATG
CCGGGCACAATTATGGCTATGAAACGCTGATGACCATGCTGCCCACCTATATGTACAGAGTTCTCAATGTGAACATTCGC
ACAAATGGCATAATATCCTCGCTGCCCTACCTGGCCATGTGGATTCTGGCCATTGTGTTTGGCATCCTGGCGGATTGCCT
CATCCGGCGGAATTTCTCCATCACCGTAGTTCGCAAGTTGATGAACAGCCTGGGCCAGTACGGACCTGCCGTGGCCCTAA
TCTCCGTGGGCTTTGTACACCACAGCCTCTGGCTGACTAGCGTGATTTTCATCCTGGGCATGGGACTCAACGGTGCCATC
TACTGCGGCTTCAAGATCAATCATCTGGACCTGTCGCCGCGCTTTGCCGGCCTGCTAATCTCCGTAACCAATTGCGTGGC
CAACTTGGTGGGTCTGATGGCGCCCATGGTGGCCGGTCATGTGATCGATCCCAAGCCGAGCGTGGAGAACTGGAGGATTG
TATTTTATATTGCTGCTGGTGTGTTTATTTTCACAGCCAGTTTTTATAACGTATTTGCCAGCGGCAAGCAGCAATGGTAA
ORF - retro_dmel_29 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 61.62 % |
| Parental protein coverage: | 76.74 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | QDGEFAWSSALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFAFLVPVAARGGGVWGLC |
| .DG.F.WS..LQGYILSSFFYGYVITQIPFG...K.YG...FLG.GM.INS..AF..P..AR.GGV.GLC | |
| Retrocopy | RDGDFEWSYKLQGYILSSFFYGYVITQIPFGLMIKYYGARHFLGWGMMINSLAAFFIPISARSGGVVGLC |
| Parental | AVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFGTIISMPLSGLLAEYGFDGGWPSIFYV |
| .VRFIQGLGEGPIVPC.H..LA.W.PPNERS..GAAVYAGAQFGTI.SMPLSGLLA.YGFDGGWPSIFY. | |
| Retrocopy | VVRFIQGLGEGPIVPCSHSLLAQWVPPNERSLAGAAVYAGAQFGTIVSMPLSGLLAHYGFDGGWPSIFYI |
| Parental | FGIVGTVWSIAFLIFVHEDPSSHPTIDEREKKYINDSLWGTDVVKSPPIPFKAIIKSLPFYAILFAHMGH |
| FG...T.W.I.F...V.E.P.....I.E.E...I....W.........IPF..I.KS.PFYAIL.AH.GH | |
| Retrocopy | FGLFSTIWCIIFICLVQESPAVSTRISEAERRHIMEAIWQAQPEERSRIPFLGIAKSPPFYAILVAHAGH |
| Parental | NYGYETLMTELPTYMKQVLRFSLKSNGLLSSLPYLAMWLFSMFISVVADWMISSKRFSHTATRKLINSIG |
| NYGYETLMT.LPTYM..VL......NG..SSLPYLAMW.........AD..I....FS.T..RKL.NS.G | |
| Retrocopy | NYGYETLMTMLPTYMYRVLNVNIRTNGIISSLPYLAMWILAIVFGILADCLI-RRNFSITVVRKLMNSLG |
| Parental | QYGPGVALIAASYTGCDRALTLAILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMSITNCSANLAGLLAP |
| QYGP.VALI..........LT..I...G.GLNG.IY.GFKINHLDL.PRFAG.L.S.TNC.ANL.GL.AP | |
| Retrocopy | QYGPAVALISVGFVHHSLWLTSVIFILGMGLNGAIYCGFKINHLDLSPRFAGLLISVTNCVANLVGLMAP |
| Parental | IAAGHLISDPSKPMMGQWQIVFFIAAFVYIICGTFYNIFGSGERQY |
| ..AGH.I.DP.KP....W.IVF.IAA.V.I....FYN.F.SG..Q. | |
| Retrocopy | MVAGHVI-DP-KPSVENWRIVFYIAAGVFIFTASFYNVFASGKQQW |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_dmel_29 retrocopy.
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_29 was not experimentally validated.
Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Drosophila melanogaster | FBgn0010497 | 1 retrocopy | |
| Drosophila melanogaster | FBgn0024315 | 1 retrocopy |
retro_dmel_29 ,
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